View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_high_16 (Length: 262)
Name: NF1542_high_16
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 33195637 - 33195388
Alignment:
| Q |
11 |
cagagacaagacagcccaggtaatgacaacaggagcatttgttcgaccactcgaaccctccaaaatttaagccttgcaatcccaaatatgt--------- |
101 |
Q |
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| T |
33195637 |
cagagacaagacagcccaggtaatgacaacaggagcatttgttcgaccactcgaaccctccaaaaattaagccttgcaatcccaaatatgtaagggaaaa |
33195538 |
T |
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| Q |
102 |
-----tgtggacaccgtataataaatctatacatctttgcgagagaaagataaagaaagagtaacgtggtagatatgataatcggtgatgcgataaaaag |
196 |
Q |
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| T |
33195537 |
tatgttgtagacaccgtataataagtctatacatctttgcgagagaaagataaaaaaagagtaacgtggtagatatgataatcggtgatgcgatgaaaag |
33195438 |
T |
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| Q |
197 |
agagaaaattgtgtgttaaataagcgtttgaaaatatgatatgtccaaat |
246 |
Q |
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| T |
33195437 |
agagaaaattgtgtgttaaataagtgtttgaaaatatgatatgtccaaat |
33195388 |
T |
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