View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_high_18 (Length: 250)
Name: NF1542_high_18
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21834555 - 21834804
Alignment:
| Q |
1 |
cttctttgctagtatcctgtaagtagtttttgttttaagattttatgtcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21834555 |
cttctttgctagtatcctgtaagt-gtttttgttttaagattttatgtcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatat |
21834653 |
T |
|
| Q |
101 |
aatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtgtgtacatagtttta-gttttattttt--------accatcgttgtactctc |
191 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| |||||||||||||| | |
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| T |
21834654 |
aatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtgtgttcatagttttatgtttttttttttttttttatccatcgttgtactccc |
21834753 |
T |
|
| Q |
192 |
aaataccacctccaccatttttgtactcaaaacgccgcttccacctttgct |
242 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21834754 |
aaatagcacctccaccatttttgtactcaaaacgccgcttccacctttgct |
21834804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 216
Target Start/End: Complemental strand, 28525035 - 28524911
Alignment:
| Q |
96 |
tatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtgtgt----acatagttttagttttatttttaccatcgttgtactctc |
191 |
Q |
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|||||||||| ||||| ||||||||| ||||| || || ||||||||||||||| | ||||||||||| | ||||||||||||||||||||| ||| |
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| T |
28525035 |
tatataatgtgcaatgcaatgcaagcagttgagtgaagttttgttaaatgtgtgtatgtggacatagttttactattatttttaccatcgttgtaccctc |
28524936 |
T |
|
| Q |
192 |
aaataccacctccaccatttttgta |
216 |
Q |
| |
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||| ||||||||||||| |||||| |
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| T |
28524935 |
aaacgccacctccaccatctttgta |
28524911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 46926743 - 46926701
Alignment:
| Q |
98 |
tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46926743 |
tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt |
46926701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 74
Target Start/End: Original strand, 51764737 - 51764766
Alignment:
| Q |
45 |
atgtcaacttacaaatgtgcatttactcat |
74 |
Q |
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| T |
51764737 |
atgtcaacttacaaatgtgcatttactcat |
51764766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 219
Target Start/End: Complemental strand, 14800940 - 14800856
Alignment:
| Q |
135 |
gttgttaaatgtgtgtgtacatagttttagttttatttttaccatcgttgtactctcaaataccacctccaccatttttgtactc |
219 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||| ||||| | |||||| |||||| ||||||||||||| ||||||||| |
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| T |
14800940 |
gttgttaaatgtgtgtgtacatagcattagtttcattgttaccgccattgtaccctcaaactccacctccaccatctttgtactc |
14800856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 74
Target Start/End: Complemental strand, 10614427 - 10614398
Alignment:
| Q |
45 |
atgtcaacttacaaatgtgcatttactcat |
74 |
Q |
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|||||||||||||||||||||||||||||| |
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|
| T |
10614427 |
atgtcaacttacaaatgtgcatttactcat |
10614398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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