View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1542_high_2 (Length: 605)
Name: NF1542_high_2
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 13 - 603
Target Start/End: Complemental strand, 10333283 - 10332692
Alignment:
| Q |
13 |
tgagaatctccattcgtaagaaatatgcaagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaacttt |
111 |
Q |
| |
|
|||||||||| |||| ||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
10333283 |
tgagaatctctattcctaagaaatatgcaagctttcctagaccaatcatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaattta |
10333184 |
T |
|
| Q |
112 |
gcttccagtcaacataaaatcatccacatacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10333183 |
tcttccagtcaacataaaatcatccacatacaagcatacgataagtaaactagtctcttctcttccttttacatacactccatgctcaacaatgcatttc |
10333084 |
T |
|
| Q |
212 |
ttaaatccttctttcttaaagcatttgtcaannnnnnnattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctat |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10333083 |
ttaaatccttctttcttaaagcatttgtcaatttttttattctaggccctaggttctcatttcaagctatatagagccttgtttagtttgaacactctat |
10332984 |
T |
|
| Q |
312 |
cttctttccctttgattcagaaaggctgattttacatctaagtgatatagtagccatgctttgcttgttgctatactacaatgactaacctgatggtttc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10332983 |
cttctttccctttgattcagaaaggctgattttacatctaagtgatatagtagccatgctttgcttgttgctatactacaatgactaacctgatggtttc |
10332884 |
T |
|
| Q |
412 |
atgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttccct |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10332883 |
atgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttccct |
10332784 |
T |
|
| Q |
512 |
tcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctttccaccaggaagcttgatcagttccatgtttgattcatctca |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
10332783 |
tcaaggttcaatttcagcttaaaaacccatttgaaatcaattgctttctttccaccaggaagcttgattagttccatgtttgattcttctca |
10332692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 418 - 563
Target Start/End: Original strand, 6372497 - 6372642
Alignment:
| Q |
418 |
tgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttcacaatcttcccttcaagg |
517 |
Q |
| |
|
||||| |||||||||||||| ||| || | ||| ||||| ||| ||||||| || |||| ||||| || ||||| || |||||||||||||| ||| || |
|
|
| T |
6372497 |
tgcaattggtgagaaaacttcagtgtaatcaaagccttcattctataagaaacctctagccacaagtcttgctttttgattcacaatcttcccgtcaggg |
6372596 |
T |
|
| Q |
518 |
ttcaatttcagcttaaaaacccattttaaatcaattgctttctttc |
563 |
Q |
| |
|
|||||||| | ||| || |||||||| | ||| ||||||||||||| |
|
|
| T |
6372597 |
ttcaatttaaacttgaagacccatttgacatctattgctttctttc |
6372642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 401 - 561
Target Start/End: Complemental strand, 14639885 - 14639725
Alignment:
| Q |
401 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
500 |
Q |
| |
|
|||||||||||||||| || |||||||||||| |||| |||||| | ||| ||||||||| ||||| || |||| ||||| || ||||||||||||| |
|
|
| T |
14639885 |
ctgatggtttcatgtcttggaactggtgagaacacttcagtataatcaaagccttccttcttcaagaaaactctagccacaagtctagctttgtgcttca |
14639786 |
T |
|
| Q |
501 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctt |
561 |
Q |
| |
|
|||||||||||||| | |||||||||| |||||| |||||||| | ||| ||||||||||| |
|
|
| T |
14639785 |
caatcttcccttcaggattcaatttcaacttaaagacccatttaacatctattgctttctt |
14639725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 401 - 585
Target Start/End: Original strand, 12196483 - 12196666
Alignment:
| Q |
401 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
500 |
Q |
| |
|
||||| |||||||||| |||| ||||||||||||||||||| || | ||| ||||||||| | || || || |||| | |||||| |||| ||| |||| |
|
|
| T |
12196483 |
ctgatagtttcatgtcttgcatctggtgagaaaactttagtgtaatcaaaaccttccttcta-aataaacctctagccaaaagccttgcttcgtgattca |
12196581 |
T |
|
| Q |
501 |
caatcttcccttcaaggttcaatttcagcttaaaaacccattttaaatcaattgctttctttccaccaggaagcttgatcagttc |
585 |
Q |
| |
|
||||||||||||| | || ||||| | ||| |||||| |||||| ||| ||||| || |||||| | ||||||| |||||||| |
|
|
| T |
12196582 |
caatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttttttccatctcgaagctttatcagttc |
12196666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 33684740 - 33684702
Alignment:
| Q |
290 |
ttgtttagtttgaacactctatcttctttccctttgatt |
328 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
33684740 |
ttgttcagtctgaacactctatcttctttccctttgatt |
33684702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 290 - 328
Target Start/End: Complemental strand, 33701794 - 33701756
Alignment:
| Q |
290 |
ttgtttagtttgaacactctatcttctttccctttgatt |
328 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
33701794 |
ttgttcagtctgaacactctatcttctttccctttgatt |
33701756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 33685015 - 33684886
Alignment:
| Q |
15 |
agaatctccattcgtaagaaatatgcaagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgc |
113 |
Q |
| |
|
||||| ||||| | ||| ||||||||||| || |||| | ||| ||||||||| || ||||| ||||||||||| || |||| ||| |||| | |||| |
|
|
| T |
33685015 |
agaatttccatgcctaataaatatgcaagcttacctaaatcagtcatttcaaactcagactttatgactgatttgaaatctttaatgtcttacatgttgc |
33684916 |
T |
|
| Q |
114 |
ttccagtcaacataaaatcatccacataca |
143 |
Q |
| |
|
||||||| | ||||| |||||| ||||||| |
|
|
| T |
33684915 |
ttccagttagcataagatcatctacataca |
33684886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 143
Target Start/End: Complemental strand, 33702069 - 33701940
Alignment:
| Q |
15 |
agaatctccattcgtaagaaatatgcaagatt-cctagaccagccatttcaaattctgacttcatgactgatttaaactcttcaatatcttgaactttgc |
113 |
Q |
| |
|
||||| ||||| | ||| ||||||||||| || |||| | ||| ||||||||| || ||||| ||||||||||| || |||| ||| |||| | |||| |
|
|
| T |
33702069 |
agaatttccatgcctaataaatatgcaagcttacctaaatcagtcatttcaaactcagactttatgactgatttgaaatctttaatgtcttacatgttgc |
33701970 |
T |
|
| Q |
114 |
ttccagtcaacataaaatcatccacataca |
143 |
Q |
| |
|
||||||| | ||||| |||||| ||||||| |
|
|
| T |
33701969 |
ttccagttagcataagatcatctacataca |
33701940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University