View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_high_20 (Length: 245)
Name: NF1542_high_20
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_high_20 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 25851828 - 25851589
Alignment:
| Q |
1 |
tggtttatgttgtcggcttcacttaatgagaaaaagattttattgttgttgctatgggaaa-tattcaaaacgtgaccgggattacgtttttggaatcct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25851828 |
tggtttatgttgtcggcttcacttaatgagaaaaagattttattgttgttgctatgggaaaatattcaaaacgtgaccgggattacgtttttggaatcct |
25851729 |
T |
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| Q |
100 |
aattattgtgtgtgatttacaggttctgcaacaacagcagcggtacgaaagagaaattgccttggctgagattgaaaacagtcgcaaagtgttaattaac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25851728 |
aattattgtgtgtgatttacaggttctgcaacaacagcagcggtacgaaagagaaattgccttggctgagattgaaaacagtcgcaaagtgttaattaac |
25851629 |
T |
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| Q |
200 |
aagctcaaggagtataaaggaaaagatttggaagtgatac |
239 |
Q |
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| T |
25851628 |
aagctcaaggagtataaaggaaaagatttggaagtgatac |
25851589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 97949 - 98188
Alignment:
| Q |
1 |
tggtttatgttgtcggcttcacttaatgagaaaaagattttattgttgttgctatgggaaa-tattcaaaacgtgaccgggattacgtttttggaatcct |
99 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
97949 |
tggtttatgttgtcggcttcacataatgagaaaaagattttattgttgttgctatgggaaaatattcaaaacgtgaccgggattacgtttttggaatcct |
98048 |
T |
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| Q |
100 |
aattattgtgtgtgatttacaggttctgcaacaacagcagcggtacgaaagagaaattgccttggctgagattgaaaacagtcgcaaagtgttaattaac |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
98049 |
aattattgtgtgtgatttacaggttctgcaacaacagcagcggtacgaaagagaaattgccttggctgagattgaaaacagtcgcaaagtgttaattaaa |
98148 |
T |
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| Q |
200 |
aagctcaaggagtataaaggaaaagatttggaagtgatac |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
98149 |
aagctcaaggagtataaaggaaaagatttggaagtgatac |
98188 |
T |
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