View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1542_low_1 (Length: 722)

Name: NF1542_low_1
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1542_low_1
NF1542_low_1
[»] chr6 (3 HSPs)
chr6 (319-686)||(2481464-2481831)
chr6 (117-212)||(2481237-2481332)
chr6 (117-212)||(5365349-5365444)
[»] chr4 (4 HSPs)
chr4 (319-686)||(12632286-12632653)
chr4 (319-686)||(27107993-27108360)
chr4 (117-212)||(12632785-12632880)
chr4 (117-212)||(27108492-27108587)
[»] chr1 (4 HSPs)
chr1 (319-686)||(44680606-44680973)
chr1 (319-661)||(23271873-23272215)
chr1 (117-212)||(23272347-23272441)
chr1 (117-212)||(44681105-44681200)
[»] chr8 (2 HSPs)
chr8 (117-306)||(18616319-18616514)
chr8 (320-375)||(18616199-18616254)
[»] chr3 (3 HSPs)
chr3 (321-458)||(4709008-4709145)
chr3 (316-417)||(4708773-4708873)
chr3 (120-206)||(4708519-4708605)
[»] chr5 (2 HSPs)
chr5 (354-416)||(39789350-39789412)
chr5 (117-156)||(14394272-14394311)
[»] chr2 (1 HSPs)
chr2 (331-396)||(13510120-13510187)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 319 - 686
Target Start/End: Original strand, 2481464 - 2481831
Alignment:
Q  319 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 418  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  2481464 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 2481563  T
Q  419 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  2481564 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 2481663  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 618  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  2481664 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 2481763  T
Q  619 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 686  Q
     ||| | |||  ||| ||||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  2481764 cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 2481831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 2481237 - 2481332
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 212  Q
    |||||||||||||| ||||||||||||  | |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  2481237 ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 2481332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 5365444 - 5365349
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 212  Q
    |||||||||||||| |||||||||||| || |||||| || | |||| ||||| ||||||||||||||||||||||||  || || ||||||||||    
T  5365444 ttgtagatgataaataacataatggataatattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaaaagaagatatt 5365349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 319 - 686
Target Start/End: Complemental strand, 12632653 - 12632286
Alignment:
Q  319 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 418  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  12632653 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 12632554  T
Q  419 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  12632553 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 12632454  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 618  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  12632453 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 12632354  T
Q  619 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 686  Q
     ||| | |||  ||| ||||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  12632353 cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 12632286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 319 - 686
Target Start/End: Complemental strand, 27108360 - 27107993
Alignment:
Q  319 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 418  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  27108360 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 27108261  T
Q  419 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  27108260 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 27108161  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 618  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  27108160 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 27108061  T
Q  619 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 686  Q
     ||| | |||  ||| ||||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  27108060 cacatcgtttattgtcgaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 27107993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 12632880 - 12632785
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 212  Q
    |||||||||||||| |||||||||||| || |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  12632880 ttgtagatgataaataacataatggataatattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 12632785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 27108587 - 27108492
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 212  Q
    |||||||||||||| ||||||||||||  | |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  27108587 ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 27108492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 319 - 686
Target Start/End: Complemental strand, 44680973 - 44680606
Alignment:
Q  319 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 418  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  44680973 tgagacaaattgtgttccatttgttggtcaaatttttcttagtgaagaagaagcctatgtcttttataagagatatgcttatcaacaagggttctcaatt 44680874  T
Q  419 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||||| | |||||||||||||    
T  44680873 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgaaaataatggaaccatcaa 44680774  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 618  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||||| ||| ||||||||||| | ||||||||||||||||| ||||||| |||     
T  44680773 aagagcagagaaatagacaatcctcaaagtgtgaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatatttccaactgagtggcgagt 44680674  T
Q  619 tacaacctttgatgttgaacataaccatggtttgctaaaccaatcataggtgcgttttttaccggctt 686  Q
     ||| | |||  |||  |||| |||||||||||||||| |||| || |||||||||||||||||||||    
T  44680673 cacatcgtttattgtcaaacacaaccatggtttgctaacccaaacagaggtgcgttttttaccggctt 44680606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 319 - 661
Target Start/End: Complemental strand, 23272215 - 23271873
Alignment:
Q  319 tgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatn 418  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||     
T  23272215 tgagacaaattgtgttccatttgtttgtcaaatttttcttagtgaagaagaagcttatgtcttttataagagatatgcttatcaacaagggttctcaatt 23272116  T
Q  419 nnnnnnggtagattcacaaacaagaatggggttatgagcaggcgtgannnnnnnngtcatcgtgaaggtagagcctccttgaaattcatggaaccatcaa 518  Q
          |||||||||  ||| ||||||||||||||  |||| |||||        ||||||||||||||| ||| ||||||| | | |||||||||||||    
T  23272115 aaaaaaggtagattcgtaaaaaagaatggggttatttgcagacgtgatattttttgtcatcgtgaaggtaaagcatccttgacaataatggaaccatcaa 23272016  T
Q  519 aagagcagagaaatagagaatcgtcaaagtgtgattgcaaagctcatttactaattaaattacaaaagtgtcatgatatatttccaattgagtggtgagg 618  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||||||||| ||| ||||||||||| | ||||||||| ||||||| ||||||| |||     
T  23272015 aagagcagagaaatagacaattgtcaaagtgtaaatgcaaagctcatttacgaatcaaattacaaaaatctcatgatatgtttccaactgagtggcgagt 23271916  T
Q  619 tacaacctttgatgttgaacataaccatggtttgctaaaccaa 661  Q
     ||| | |||  ||| |||||||||||||||||||||| ||||    
T  23271915 cacatcgtttattgtcgaacataaccatggtttgctaacccaa 23271873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 23272441 - 23272347
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 212  Q
    |||||||||||||| ||||||||| || || |||||| || | |||||||||| ||||||||||||||||||||||||  || |||||||||||||    
T  23272441 ttgtagatgataaataacataatg-ataatattagtgctacaaagaccaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 23272347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 117 - 212
Target Start/End: Complemental strand, 44681200 - 44681105
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatatt 212  Q
    |||||||||||||| ||||||||||||  | |||||| || | |||| ||||| ||||||||||||||||||||||||  || |||||||||||||    
T  44681200 ttgtagatgataaataacataatggatagtattagtgctacaaagacaaacaataaaataagttttgatttgaatgaatatccaatagaagatatt 44681105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 9e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 117 - 306
Target Start/End: Complemental strand, 18616514 - 18616319
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaagatattaatt 216  Q
    ||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||    |||    
T  18616514 ttgtagatgataaagaacataatggattatgttagtgttatagagatcaacaataaaataagttttgatttgaatgaaagtctaa-agaagat----att 18616420  T
Q  217 gctttagaaaa--tttgttcagaaataatga---------ctgagcatgatttagtgaaggacttgttagtggttgataacataggaagttctgagaaag 305  Q
    |||||||||||   || || | ||| ||| |          | |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  18616419 gctttagaaaagggttatttacaaacaattattcagcatttttagcatgatttagtgaaggacttgttagtagttgataacatagaaagttctgagaaag 18616320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 18616254 - 18616199
Alignment:
Q  320 gagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatt 375  Q
    |||||||||||||||   |||| ||||||||||||||||| |||| ||||||||||    
T  18616254 gagacaaattgtgttttttttgctggtcaaatttttcttaatgaaaaagaagcatt 18616199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 321 - 458
Target Start/End: Complemental strand, 4709145 - 4709008
Alignment:
Q  321 agacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaatnnn 420  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||||  || |||||       
T  4709145 agacaaattttgtttcctttgttggtcaaatttttcttagtgaagaagaaggatatgtcttttataagagatatgcttatcagcaagaattgtcaataaa 4709046  T
Q  421 nnnnggtagattcacaaacaagaatggggttatgagca 458  Q
        |||||||||  ||| |||||||||||||| ||||    
T  4709045 aaaaggtagattcgtaaaaaagaatggggttattagca 4709008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 316 - 417
Target Start/End: Original strand, 4708773 - 4708873
Alignment:
Q  316 taatgagacaaattgtgttccctttgttggtcaaatttttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctca 415  Q
    |||||||||||||| ||||| ||||||||||| ||||||| |||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||    
T  4708773 taatgagacaaattatgttctctttgttggtcgaattttttttagtgaaaaagaagcatgtct-ttttataagagatatgcttatcaacaagggttctca 4708871  T
Q  416 at 417  Q
    ||    
T  4708872 at 4708873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 206
Target Start/End: Original strand, 4708519 - 4708605
Alignment:
Q  120 tagatgataaagaacataatggatgatgttagtgttatagagaccaacaacaaaataagttttgatttgaatgaaagtctaatagaa 206  Q
    ||||||||||| ||| |||||| ||||| || || || | |||||| ||| |||||||||||||||||||||||| ||| |||||||    
T  4708519 tagatgataaataacttaatggttgatgctaatgctacatagaccatcaataaaataagttttgatttgaatgaatgtccaatagaa 4708605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 39789412 - 39789350
Alignment:
Q  354 ttcttagtgaagaagaagcatttgtcttttataagagatatgcttatcaacaagggttctcaa 416  Q
    |||||||||||||||||| |||| |||||||||||| |||||| |||||||| ||||||||||    
T  39789412 ttcttagtgaagaagaagaatttatcttttataagatatatgcatatcaacacgggttctcaa 39789350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 14394272 - 14394311
Alignment:
Q  117 ttgtagatgataaagaacataatggatgatgttagtgtta 156  Q
    |||||||||||||| |||||||| ||||||||||||||||    
T  14394272 ttgtagatgataaataacataattgatgatgttagtgtta 14394311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 396
Target Start/End: Original strand, 13510120 - 13510187
Alignment:
Q  331 tgttccctttgttggtcaaat--ttttcttagtgaagaagaagcatttgtcttttataagagatatgc 396  Q
    |||||| ||||||||||||||  |||||||||  | |||||| |||||||||| ||||||||||||||    
T  13510120 tgttccttttgttggtcaaatatttttcttagcaaggaagaaacatttgtcttctataagagatatgc 13510187  T

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