View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_10 (Length: 317)
Name: NF1542_low_10
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 45142063 - 45142374
Alignment:
| Q |
1 |
ttctggcatcgaaagaatcggcttatattagtggacacaatttggtggtcgatggaggcttctctgttattaatagttgtgttcctactactattaaaaa |
100 |
Q |
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| T |
45142063 |
ttcttgcatcggaagaatcggcttatattagtggacacaatttggtggtcgatggaggcttttctgttattaatagttgtgtgcctactactattaaaaa |
45142162 |
T |
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| Q |
101 |
ataagcggtccaatttggaatgtgataaatatcctacattctgtttctaagtttgttgtaaatttggaatgcgttcctactattagaaaggaaagccttg |
200 |
Q |
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| T |
45142163 |
ataagtggtccaatttggaatgtgataaatatcctacattctgtttctaagtttgttgtaaatttggaatgcgttcctactattagaaaggaaagccttg |
45142262 |
T |
|
| Q |
201 |
taattcttgatcatagtgatgagatcgacctcagtgaggatgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttat |
300 |
Q |
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| T |
45142263 |
taattcttgatcatagtgatgagatcgacctcagtgaggatgtaggattcaaattgatccaaacatcgtgttttcatctttactttctgtaatcttttat |
45142362 |
T |
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| Q |
301 |
tttgtgtctgtg |
312 |
Q |
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| T |
45142363 |
tttgtgtgtgtg |
45142374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 45152722 - 45152774
Alignment:
| Q |
15 |
gaatcggcttatattagtggacacaatttggtggtcgatggaggcttctctgt |
67 |
Q |
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| T |
45152722 |
gaatcggcttatattagtggacaaaacttggtggtcgatggaggcttcactgt |
45152774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 38256541 - 38256599
Alignment:
| Q |
15 |
gaatcggcttatattagtggacacaatttggtggtcgatggaggcttctctgttattaa |
73 |
Q |
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| T |
38256541 |
gaatctgcttatattagtggacacaacttggtcgttgatggaggcttctcagtcattaa |
38256599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 268
Target Start/End: Complemental strand, 34530995 - 34530943
Alignment:
| Q |
217 |
tgatgagatcgacctcagtgaggatgtaggattcaaa-ttgatccaaacatcg |
268 |
Q |
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| T |
34530995 |
tgatgagatcgacctcaacgaggatgtaggattcaaagttgatccaaatatcg |
34530943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 241
Target Start/End: Complemental strand, 29361487 - 29361452
Alignment:
| Q |
206 |
cttgatcatagtgatgagatcgacctcagtgaggat |
241 |
Q |
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| T |
29361487 |
cttgatcatagtgatgggatcgacctcagtgaggat |
29361452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 206 - 241
Target Start/End: Original strand, 30270623 - 30270658
Alignment:
| Q |
206 |
cttgatcatagtgatgagatcgacctcagtgaggat |
241 |
Q |
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| T |
30270623 |
cttgatcatagtgatgggatcgacctcagtgaggat |
30270658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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