View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_11 (Length: 311)
Name: NF1542_low_11
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 10333406 - 10333683
Alignment:
| Q |
1 |
aaaaataagaaagtgttgatccaaaactattcaggaagcttattggatcactaaggtacgtatctatgtcaaagcaaaccgaatattcgctattcagttg |
100 |
Q |
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| T |
10333406 |
aaaaagaagaaagtgttgatccaacactattcatgaagcttattgaatcgctaaggta----tctatgtcaaagcagaccgaatattcgctattcagttg |
10333501 |
T |
|
| Q |
101 |
aaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttagtcgttaaaagaataccgaggtacataaatgggacactacatcatggcatcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10333502 |
aaatggtgaccaagttcatgagtaatcatcttaa-------------gtcgttaaaagaataccgaggtacataaatgggacactacatcatggcatcct |
10333588 |
T |
|
| Q |
201 |
attttctactggaaaaagatttgagcaactcaacatgataggttactcatatgctaatagtttttgtgttcatatttcaaggagcccttatttct |
295 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10333589 |
attttctactggagaaagatttgagcaactcaacatgataggttactcatatgctaatagtttttgtgttcatattacaaggagcccttatttct |
10333683 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 14640496 - 14640553
Alignment:
| Q |
91 |
tattcagttgaaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttag |
148 |
Q |
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|||||||||| ||| || | ||||||||||||||| | ||| |||||||||||||||| |
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| T |
14640496 |
tattcagttggaattgttagcaagttcatgagtaaccctctcaaaactcatttcttag |
14640553 |
T |
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