View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_12 (Length: 305)
Name: NF1542_low_12
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 5e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 23855952 - 23856190
Alignment:
| Q |
1 |
cgaagctacacaaatggagtcaagagttttgcaaccatccagtcgtcaaggaaattatgccgacaaaagaacaacaatttggctatttcaaacctcgcgc |
100 |
Q |
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| T |
23855952 |
cgaagctacacaaatggagtcaagagttttacaaccatccagtcgtcaaggaaattatgccgacaaaagaacaacaatttggctatttcaaagctcgcgc |
23856051 |
T |
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| Q |
101 |
tgcaagcat---------------tgctgctgcatcaaagtagattattatagtgcgagactctgaacttctaatgaaatttgtacaagtacttgtgtgt |
185 |
Q |
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| T |
23856052 |
tgcaagcattgctgctgcaaacaatgctgctgcatcaaagtagattattatagcgcgagactctgaacttgtaatgaaatttgtacaagtacttgtgtgt |
23856151 |
T |
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| Q |
186 |
tggtgagttattgtttgtttggattaagttcaaatggaa |
224 |
Q |
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| T |
23856152 |
tggtgagttattgtttgtttggattaagttcaaatggaa |
23856190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 23853429 - 23853547
Alignment:
| Q |
1 |
cgaagctacacaaatggagtcaagagttttgcaaccatccagtcgtcaaggaaattatgccgacaaaagaacaacaatttggctatttcaaacctcgcgc |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||||||| ||||||| |
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| T |
23853429 |
cgaagctacacaaatggagtcaagagttttacaaccatccagtcgtcaaagaaattatgccgacaaaagaacaacaacatggatttttcaaagctcgcgc |
23853528 |
T |
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| Q |
101 |
tgcaagcattgctgctgca |
119 |
Q |
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| T |
23853529 |
tgcaagcattgctgctgca |
23853547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 3 - 181
Target Start/End: Original strand, 23851040 - 23851221
Alignment:
| Q |
3 |
aagctacacaaatggagtcaagagttttgcaaccatccagtcgtcaaggaaattatgccgacaaaagaacaacaatttggctatttcaaacctcgcgctg |
102 |
Q |
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|||||||| |||||||||| ||| |||| |||||||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||| ||||||||| |
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| T |
23851040 |
aagctacaaaaatggagtctagacttttacaaccatccagtcgtcaaagaagttatgccttcaaaagagcaacaatttggctatttcaaagctcgcgctg |
23851139 |
T |
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| Q |
103 |
caagcattgctgctgcatcaaagtag---attattatagtgcgagactctgaacttctaatgaaatttgtacaagtacttgt |
181 |
Q |
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| T |
23851140 |
caagccttgctgctccatcaaaatagaataatataatagagtgagactcttaacttgtaatgaaatttgtataagtacttgt |
23851221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 23838618 - 23838744
Alignment:
| Q |
3 |
aagctacacaaatggagtcaagagttttgcaaccatccagtcgtcaaggaaattatgccgacaaaagaacaacaatttggctatttcaaacctcgcgctg |
102 |
Q |
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|||||| ||||||||||| |||| ||| |||||||||| | ||||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||| |
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| T |
23838618 |
aagctatacaaatggagtaaagaatttaacaaccatccaatagtcaaggaaattatgccttcaaaagatcaacaatttgcatatttcaaagctcgcgctg |
23838717 |
T |
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| Q |
103 |
caagcattgctgctgcatcaaagtaga |
129 |
Q |
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|||| |||||||||||||||| |||| |
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| T |
23838718 |
aaagccttgctgctgcatcaaaataga |
23838744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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