View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_13 (Length: 291)
Name: NF1542_low_13
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_13 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 75 - 291
Target Start/End: Original strand, 42758561 - 42758777
Alignment:
| Q |
75 |
aaaaattgacgtgatatagttagaatactaaaagacagagatataaatttaacttcaacaaagggtctaactaaagttgattatcacttacattatatta |
174 |
Q |
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| T |
42758561 |
aaaaattgatgtgatatagttagaatactaaaatacagagatataaatttaacttcaaccaaggatctaactaaagttgattatcacttacattatatta |
42758660 |
T |
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| Q |
175 |
ataatgatactatcaaatattacggaatatttcgtcataaacaacattagatgtaaaattgatatctttgttgtttcatcactgcttcgtatcattaacc |
274 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
42758661 |
ataatgatactatcaaatattacggaatacttcctcataaacaacattagatgtaaaattgatatctttgttgtttcatcactgatcagtatcattaacc |
42758760 |
T |
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| Q |
275 |
cttctcttgatgtaact |
291 |
Q |
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|||||||||| |||||| |
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| T |
42758761 |
cttctcttgaggtaact |
42758777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 42758491 - 42758538
Alignment:
| Q |
29 |
tactagatttccaacccgtgccccgcacgggttttatgagctttataa |
76 |
Q |
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| T |
42758491 |
tactagatttctgacccgtacgccgcacgggttttatgagctttataa |
42758538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 75 - 291
Target Start/End: Complemental strand, 1403317 - 1403101
Alignment:
| Q |
75 |
aaaaattgacgtgatatagttagaatactaaaagacagagatataaatttaacttcaacaaagggtctaactaaagttgattatcacttacattatatta |
174 |
Q |
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| T |
1403317 |
aaaaattgatgtgatatagttagaatactaaaagacagagatataaatttaacttcaacaaacggtctaactaaagttgattatcacttacattatatta |
1403218 |
T |
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| Q |
175 |
ataatgatactatcaaatattacggaatatttcgtcataaacaacattagatgtaaaattgatatctttgttgtttcatcactgcttcgtatcattaacc |
274 |
Q |
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||||||||||||||||||||||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||| |
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| T |
1403217 |
ataatgatactatcaaatattacagaatactttctcataaacaacagtagatgtaaaattgatatctttgttgtttcatcagtgatgagtatcattaact |
1403118 |
T |
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| Q |
275 |
cttctcttgatgtaact |
291 |
Q |
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| T |
1403117 |
cttcttttgaggtaact |
1403101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 71
Target Start/End: Complemental strand, 24122297 - 24122256
Alignment:
| Q |
30 |
actagatttccaacccgtgccccgcacgggttttatgagctt |
71 |
Q |
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| T |
24122297 |
actagattgacaacccgtgcgccgcacgggttttatgagctt |
24122256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 1403382 - 1403334
Alignment:
| Q |
28 |
ttactagatttccaacccgtgccccgcacgggttttatgagctttataa |
76 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||| ||||| |
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| T |
1403382 |
ttactagatttctgacccgtgtgccgcacgggttttatgagctgtataa |
1403334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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