View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1542_low_14 (Length: 289)
Name: NF1542_low_14
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 13781352 - 13781615
Alignment:
| Q |
18 |
ataacgtgacagagcataacaaaatctttaaattttttatacaactcgtatgaatttatatacctcagaagaaattaaaagaagacatcgattcaatgaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13781352 |
ataacgtgacagagcataacaaaatctttaaattttttatacaactcgtatgaatttatatacctcagaagaaatgaaaagaagacatcgattcaatgaa |
13781451 |
T |
|
| Q |
118 |
ttttaatatttattttcctctgtcgtttggatcttaaataaatagaagaattatcgagttattct-aaagcgattctaagttgttctttttaaggttcat |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13781452 |
ttttaatatttattttcctctatcgtttggatcttaaataaatagaagaattatcgagttattctaaaagcgattctaagttgttctttttaaggttcat |
13781551 |
T |
|
| Q |
217 |
tcaagtgattaagctcgaatatttaaaagagagttcgctttgaaaagagagttcaagtctgtgctgct |
284 |
Q |
| |
|
| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
13781552 |
t--agcgattaagctcgaatatttaaa--agagtctgctttgaaaagagagttcaagtctgagctgct |
13781615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University