View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1542_low_19 (Length: 251)

Name: NF1542_low_19
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1542_low_19
NF1542_low_19
[»] chr5 (9 HSPs)
chr5 (1-251)||(18052595-18052843)
chr5 (2-136)||(18034916-18035050)
chr5 (1-132)||(18047612-18047743)
chr5 (2-145)||(18029119-18029262)
chr5 (178-214)||(237849-237885)
chr5 (186-214)||(14479758-14479786)
chr5 (178-214)||(19128757-19128793)
chr5 (178-214)||(19359691-19359727)
chr5 (178-214)||(28705907-28705943)
[»] chr6 (3 HSPs)
chr6 (178-214)||(505524-505560)
chr6 (178-214)||(10171263-10171299)
chr6 (178-214)||(19310988-19311024)
[»] chr1 (3 HSPs)
chr1 (178-215)||(28182101-28182138)
chr1 (178-214)||(7406232-7406268)
chr1 (178-214)||(8987777-8987813)
[»] scaffold0504 (1 HSPs)
scaffold0504 (178-214)||(5408-5444)
[»] scaffold0418 (1 HSPs)
scaffold0418 (178-214)||(6913-6949)
[»] scaffold0176 (1 HSPs)
scaffold0176 (178-214)||(26579-26615)
[»] chr8 (4 HSPs)
chr8 (178-214)||(3165150-3165186)
chr8 (186-214)||(3417345-3417373)
chr8 (178-214)||(27442169-27442205)
chr8 (178-214)||(41974628-41974664)
[»] chr7 (3 HSPs)
chr7 (186-214)||(36378799-36378827)
chr7 (178-214)||(45099922-45099958)
chr7 (178-214)||(47171435-47171471)
[»] chr4 (4 HSPs)
chr4 (178-214)||(7841532-7841568)
chr4 (178-214)||(19080373-19080409)
chr4 (178-214)||(31329746-31329782)
chr4 (178-214)||(40495083-40495119)
[»] chr3 (3 HSPs)
chr3 (178-214)||(13477045-13477081)
chr3 (186-214)||(41458846-41458874)
chr3 (178-214)||(48648191-48648227)
[»] chr2 (2 HSPs)
chr2 (178-214)||(22301182-22301218)
chr2 (178-214)||(29559448-29559484)


Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 18052595 - 18052843
Alignment:
Q  1 atggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18052595 atggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaac 18052694  T
Q  101 cttcttcaaatgcttaaggacgcaggtaacaagacatgattttgatccatctggtgacttaaaaaacactcacacacacacctgctgtcaacagatcctg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| |||||||    
T  18052695 cttcttcaaatgcttaaggacgcaggtaacaagacatgattttgatccatctggtgacttaaaaaacact--cacacacacctgctctcaacggatcctg 18052792  T
Q  201 actcatatatatatttttgcaaattaattatttttaatcatttgaatgtaa 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18052793 actcatatatatatttttgcaaattaattatttttaatcatttgaatgtaa 18052843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 136
Target Start/End: Original strand, 18034916 - 18035050
Alignment:
Q  2 tggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaacc 101  Q
    |||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |    
T  18034916 tggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacagctctcaaactcaagaaaaaatcgaatc 18035015  T
Q  102 ttcttcaaatgcttaaggacgcaggtaacaagaca 136  Q
    |||| || || |||||| | |||||||||||||||    
T  18035016 ttctccagatccttaagaatgcaggtaacaagaca 18035050  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 18047612 - 18047743
Alignment:
Q  1 atggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaac 100  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  18047612 atggtcacatgaatggatgaaacatggtacctgttcagaatctaagcttactcaacatgactactttcaaacggctctcaaactcaagaaaaaattgaac 18047711  T
Q  101 cttcttcaaatgcttaaggacgcaggtaacaa 132  Q
     |  ||||||| ||| || |||||||||||||    
T  18047712 atcattcaaatccttgagaacgcaggtaacaa 18047743  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 145
Target Start/End: Original strand, 18029119 - 18029262
Alignment:
Q  2 tggtcacatgaatggatgaaacatggcacatgttcagaatctaagctttctcaacatgactactttcaaacagctctcaaactcaagaaaaaactgaacc 101  Q
    |||||||||||||||  ||||||||| |||||| |||||||| |||||  ||||||||| |||||| |||| ||||| ||||| ||| | |||   ||||    
T  18029119 tggtcacatgaatgggagaaacatggtacatgtgcagaatctgagcttgatcaacatgagtactttgaaactgctcttaaacttaaggagaaagcaaacc 18029218  T
Q  102 ttcttcaaatgcttaaggacgcaggtaacaagacatgattttga 145  Q
    | ||||| |  || | | | ||||||||||||||||||||||||    
T  18029219 tccttcagagcctcacgaatgcaggtaacaagacatgattttga 18029262  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 237849 - 237885
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  237849 acacctggtgtcaacggatcctgactcatatatatat 237885  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 14479758 - 14479786
Alignment:
Q  186 tgtcaacagatcctgactcatatatatat 214  Q
    |||||||||||||||||||||||||||||    
T  14479758 tgtcaacagatcctgactcatatatatat 14479786  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 19128793 - 19128757
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  19128793 acacctggtgtcaacggatcctgactcatatatatat 19128757  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 19359727 - 19359691
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  19359727 acacctggtgtcaacggatcctgactcatatatatat 19359691  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 28705907 - 28705943
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  28705907 acacctggtgtcaacggatcctgactcatatatatat 28705943  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 505560 - 505524
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| |||||||||||||||||||||||||||||    
T  505560 acacctgatgtcaacagatcctgactcatatatatat 505524  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 10171299 - 10171263
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  10171299 acacctggtgtcaacggatcctgactcatatatatat 10171263  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 19311024 - 19310988
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  19311024 acacctggtgtcaacggatcctgactcatatatatat 19310988  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 178 - 215
Target Start/End: Original strand, 28182101 - 28182138
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatatt 215  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  28182101 acacctggtgtcaacagatcctcactcatatatatatt 28182138  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 7406268 - 7406232
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  7406268 acacctggtgtcaacggatcctgactcatatatatat 7406232  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 8987813 - 8987777
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  8987813 acacctgatgtcaaccgatcctgactcatatatatat 8987777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 5408 - 5444
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  5408 acacctggtgtcaacggatcctgactcatatatatat 5444  T

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Target: scaffold0418 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 6913 - 6949
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  6913 acacctggtgtcaacggatcctgactcatatatatat 6949  T

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Target: scaffold0176 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 26615 - 26579
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  26615 acacctggtgtcaacggatcctgactcatatatatat 26579  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 3165150 - 3165186
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  3165150 acacctgatgtcaacggatcctgactcatatatatat 3165186  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 3417373 - 3417345
Alignment:
Q  186 tgtcaacagatcctgactcatatatatat 214  Q
    |||||||||||||||||||||||||||||    
T  3417373 tgtcaacagatcctgactcatatatatat 3417345  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 27442169 - 27442205
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  27442169 acacctggtgtcaacggatcctgactcatatatatat 27442205  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 41974664 - 41974628
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  41974664 acacctggtgtcaacggatcctgactcatatatatat 41974628  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Complemental strand, 36378827 - 36378799
Alignment:
Q  186 tgtcaacagatcctgactcatatatatat 214  Q
    |||||||||||||||||||||||||||||    
T  36378827 tgtcaacagatcctgactcatatatatat 36378799  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 45099922 - 45099958
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  45099922 acacctggtgtcaacggatcctgactcatatatatat 45099958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 47171435 - 47171471
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  47171435 acacctggtgtcaacggatcctgactcatatatatat 47171471  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 7841568 - 7841532
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  7841568 acacctgatgtcaacggatcctgactcatatatatat 7841532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 19080409 - 19080373
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  19080409 acacctggtgtcaacagatcctgtctcatatatatat 19080373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 31329746 - 31329782
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  31329746 acacctggtgtcaacggatcctgactcatatatatat 31329782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 40495119 - 40495083
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  40495119 acacctggtgtcaacggatcctgactcatatatatat 40495083  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 13477081 - 13477045
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  13477081 acacctggtgtcaacggatcctgactcatatatatat 13477045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 214
Target Start/End: Original strand, 41458846 - 41458874
Alignment:
Q  186 tgtcaacagatcctgactcatatatatat 214  Q
    |||||||||||||||||||||||||||||    
T  41458846 tgtcaacagatcctgactcatatatatat 41458874  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 48648227 - 48648191
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  48648227 acacctggtgtcaacggatcctgactcatatatatat 48648191  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 22301218 - 22301182
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  22301218 acacctggtgtcaacggatcctgactcatatatatat 22301182  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 214
Target Start/End: Original strand, 29559448 - 29559484
Alignment:
Q  178 acacctgctgtcaacagatcctgactcatatatatat 214  Q
    ||||||| |||||||||||||| ||||||||||||||    
T  29559448 acacctggtgtcaacagatcctaactcatatatatat 29559484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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