View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_20 (Length: 250)
Name: NF1542_low_20
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 23855857 - 23855622
Alignment:
| Q |
4 |
tccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatcagtgataaaaaga |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
23855857 |
tccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattctttacgactcttctcgcgttctttctcatcagtgataaaaaga |
23855758 |
T |
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| Q |
104 |
gatttcactgcagcagccatacactgattgcacaaataaagttagatagataggaaaataaaactggataagcaaagtttacatttagtgacatggtaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23855757 |
gatttcactgcagcagccatacactgattgcacaaataaagttagatagataggaaaataaaaccggataagcaaagtttacatttagtgacatggtaaa |
23855658 |
T |
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| Q |
204 |
taaattctagcatggatcacacattaggctgttcat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
23855657 |
taaattctagcatggatcacacattaggctgttcat |
23855622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 23850943 - 23850711
Alignment:
| Q |
4 |
tccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatcagtgataaaaaga |
103 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||||||| | |
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| T |
23850943 |
tccaaagaacttgtccttcagctcattctcaagaaactgcagagcctcgaataattcttcacgagccttctcgcgctctttctcatcaggcataaaaaca |
23850844 |
T |
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| Q |
104 |
gatttcactgcagcagccatacactgattgcaca-aataaagttagatagataggaaaataaaactggataagcaaagtttacatttagtgacatggtaa |
202 |
Q |
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| T |
23850843 |
gatttccatgcagcaatcgtacactgattgaacagattaaagttatatagattagaaaataattcaaga----caaagttcacatttagtgacatggtag |
23850748 |
T |
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| Q |
203 |
ataaattctagcatggatcacacattaggctgttcat |
239 |
Q |
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| T |
23850747 |
ataaattctagcatggatcacacattatgcggttcat |
23850711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 23853334 - 23853171
Alignment:
| Q |
4 |
tccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatcagtgataaaaaga |
103 |
Q |
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||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||| | ||||||| | |
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| T |
23853334 |
tccaaagaacttgtccttcagctcattctcaagaaactgcagagcctcgaataattcttcgcgagccttctcgcgctctttctcatccggtataaaaaca |
23853235 |
T |
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| Q |
104 |
gatttcactgcagcagccatacactgattgcacaaa-taaagttagatagataggaaaataaaa |
166 |
Q |
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| T |
23853234 |
gatttccatgcagcagccacacactgattgcacaaattaactttagatagatcggaaaataaaa |
23853171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 23838521 - 23838385
Alignment:
| Q |
4 |
tccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatcagtgataaaaaga |
103 |
Q |
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||||||||| ||||| || | || ||||||||||||||| ||||||| |||| |||||||| | ||||||||||| |||| ||||| ||||||| |
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| T |
23838521 |
tccaaagaatttgtcctttaactcattctcaagaaactgtagagccttcaatagttcttcactagctttctcgcgttctttcttatcaggcataaaaacc |
23838422 |
T |
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| Q |
104 |
gatttcactgcagcagccatacactgattgcacaaat |
140 |
Q |
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|| || ||||||||||| ||||||||| ||||||| |
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| T |
23838421 |
gacatccatgcagcagccacacactgatttcacaaat |
23838385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 23860907 - 23860992
Alignment:
| Q |
5 |
ccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatc |
90 |
Q |
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|||||| |||||| ||||||| ||||||||||| ||||||||||||| | |||||||| | |||||| ||| ||||||||||| |
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| T |
23860907 |
ccaaagtacttgttcttcagctcattctcaagaatctgcagagcctcggttgattcttcaacattcttctggcgctccttctcatc |
23860992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 23843772 - 23843859
Alignment:
| Q |
4 |
tccaaagaacttgtcattcagcttattctcaagaaactgcagagcctcgaataattcttcacgactcttctcgcgttccttctcatca |
91 |
Q |
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||||||| ||||||| ||||||| |||||||||||| || ||||||||| | ||||||| | |||||||||| || ||||||||| |
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| T |
23843772 |
tccaaagtacttgtccttcagctcattctcaagaaagtgaagagcctcggttgcttcttcaatattcttctcgcgctctttctcatca |
23843859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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