View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_22 (Length: 246)
Name: NF1542_low_22
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 45142080 - 45141850
Alignment:
| Q |
1 |
attcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttc |
100 |
Q |
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| T |
45142080 |
attcttccgatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttt |
45141981 |
T |
|
| Q |
101 |
actcatctccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcac |
200 |
Q |
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| T |
45141980 |
actcatctccatattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcaccacac |
45141881 |
T |
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| Q |
201 |
gttgaacgtacaagtcctaagagaccatgtt |
231 |
Q |
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| T |
45141880 |
gttgaacgtacaagtcctaagagaccatgtt |
45141850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 45152714 - 45152495
Alignment:
| Q |
12 |
gcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatctcca |
111 |
Q |
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| T |
45152714 |
gcaagaaacatagcagcttctgcaatatgaccagcctttagtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttcactcacatcct |
45152615 |
T |
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| Q |
112 |
tattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgcacgttgaacgtac |
211 |
Q |
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| T |
45152614 |
tgttcagtgctctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccataagctccaagctcactgcacgttgagcgaac |
45152515 |
T |
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| Q |
212 |
aagtcctaagagaccatgtt |
231 |
Q |
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| T |
45152514 |
aaggcctataagaccatgtt |
45152495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 38256536 - 38256346
Alignment:
| Q |
9 |
gatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaacttcactcatct |
108 |
Q |
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||||||||||| | ||||| ||||||||||| | |||||| | ||||||||| | |||||||||| |||| | |||||||||||||||| | |
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| T |
38256536 |
gatgcaagaaacaaagcagtctctgcaatatgagcagccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttcactcggca |
38256437 |
T |
|
| Q |
109 |
ccatattcagtgctctacatgcaagaggcgtggcaacaccattcggtgagattgaattgactctaattccgtaagctccaagctcaccgca |
199 |
Q |
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| T |
38256436 |
ccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcaccgca |
38256346 |
T |
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