View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_26 (Length: 231)
Name: NF1542_low_26
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 42654613 - 42654828
Alignment:
| Q |
1 |
agtactattctcattcatccattaacctaagatgaaccgtttgaggtgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaat |
100 |
Q |
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| T |
42654613 |
agtactattctcattcatccattaacctaagatgaaccgtttgaggtgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaat |
42654712 |
T |
|
| Q |
101 |
ttgtgttatcaagacaacatactaagaaatcaggcctatgaagtccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatg |
200 |
Q |
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| T |
42654713 |
ttgtgttatcaagacaacatactaagaaatcaggcctatgaagtccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatg |
42654812 |
T |
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| Q |
201 |
ccaatagttcctatga |
216 |
Q |
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|||||||||||||||| |
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| T |
42654813 |
ccaatagttcctatga |
42654828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 43053322 - 43053153
Alignment:
| Q |
44 |
aggtgtcaaaacttttctttctaaccaagagacaagtgatttttgaaggattggaatttgtgttatcaagacaacatactaagaaatcaggcctatgaag |
143 |
Q |
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|||||||||||||||||||||| | ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
43053322 |
aggtgtcaaaacttttctttctgatcaatagacaagtgattcttgaaggattggaatttgtgttatcaagacaacaaactaagaaatcaggcctatgaag |
43053223 |
T |
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| Q |
144 |
tccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatgccaatagttccta |
213 |
Q |
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| T |
43053222 |
tccaacatgtagcctatcctttcccacaaccattgcagatgcatcaagcaaaacatgccaatagttccta |
43053153 |
T |
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