View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1542_low_5 (Length: 385)

Name: NF1542_low_5
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1542_low_5
NF1542_low_5
[»] chr8 (17 HSPs)
chr8 (283-344)||(40587695-40587756)
chr8 (283-347)||(25346057-25346121)
chr8 (283-347)||(36776427-36776491)
chr8 (283-347)||(24053937-24054001)
chr8 (283-347)||(41972979-41973043)
chr8 (291-344)||(8760732-8760785)
chr8 (291-344)||(25836268-25836321)
chr8 (291-344)||(1942820-1942873)
chr8 (282-347)||(40616094-40616159)
chr8 (293-344)||(32844182-32844233)
chr8 (291-341)||(8162781-8162831)
chr8 (290-347)||(42245732-42245789)
chr8 (283-347)||(9472175-9472238)
chr8 (290-336)||(45435020-45435066)
chr8 (282-347)||(44389005-44389070)
chr8 (283-347)||(18378802-18378866)
chr8 (282-330)||(25620731-25620779)
[»] chr1 (23 HSPs)
chr1 (283-344)||(38894778-38894839)
chr1 (283-347)||(46626324-46626388)
chr1 (283-344)||(33075659-33075720)
chr1 (283-347)||(19322344-19322408)
chr1 (283-344)||(1826816-1826877)
chr1 (283-344)||(22198910-22198971)
chr1 (283-347)||(47134727-47134791)
chr1 (294-344)||(29844884-29844934)
chr1 (294-344)||(10766220-10766270)
chr1 (291-341)||(28570756-28570806)
chr1 (291-344)||(42678405-42678458)
chr1 (282-347)||(50557849-50557913)
chr1 (283-347)||(16300412-16300476)
chr1 (282-347)||(19400753-19400818)
chr1 (283-347)||(1367314-1367378)
chr1 (293-347)||(52306102-52306156)
chr1 (290-347)||(17364603-17364660)
chr1 (282-347)||(51971272-51971336)
chr1 (283-347)||(4890121-4890185)
chr1 (283-347)||(5426239-5426303)
chr1 (283-347)||(29188300-29188364)
chr1 (283-347)||(33359723-33359787)
chr1 (279-331)||(43116067-43116119)
[»] chr5 (14 HSPs)
chr5 (283-347)||(30754432-30754496)
chr5 (283-347)||(36886968-36887032)
chr5 (291-344)||(6305452-6305505)
chr5 (291-344)||(43138549-43138602)
chr5 (282-346)||(12422345-12422409)
chr5 (296-346)||(42977833-42977883)
chr5 (283-347)||(17643385-17643449)
chr5 (291-341)||(754450-754500)
chr5 (291-344)||(12592471-12592524)
chr5 (283-347)||(3088031-3088095)
chr5 (283-347)||(25698717-25698781)
chr5 (283-347)||(30140525-30140589)
chr5 (283-347)||(33709813-33709877)
chr5 (283-347)||(41689298-41689362)
[»] chr4 (29 HSPs)
chr4 (283-347)||(3757749-3757813)
chr4 (283-347)||(13171648-13171712)
chr4 (283-347)||(50119957-50120021)
chr4 (290-347)||(30529278-30529335)
chr4 (283-347)||(24547354-24547418)
chr4 (283-346)||(51347511-51347574)
chr4 (291-344)||(8956947-8957000)
chr4 (291-344)||(8986919-8986972)
chr4 (291-344)||(37349817-37349870)
chr4 (283-347)||(36743201-36743265)
chr4 (294-344)||(53991554-53991604)
chr4 (290-347)||(17730463-17730520)
chr4 (283-344)||(24948289-24948350)
chr4 (283-344)||(29712393-29712454)
chr4 (283-347)||(3821198-3821262)
chr4 (283-347)||(20588585-20588649)
chr4 (294-344)||(578607-578657)
chr4 (291-341)||(9888895-9888945)
chr4 (294-340)||(35716305-35716351)
chr4 (290-344)||(39406234-39406288)
chr4 (283-347)||(39716717-39716781)
chr4 (283-330)||(5752474-5752521)
chr4 (282-347)||(16896007-16896072)
chr4 (291-344)||(50033712-50033764)
chr4 (283-331)||(35833429-35833477)
chr4 (283-330)||(12682772-12682819)
chr4 (293-347)||(15704144-15704198)
chr4 (290-344)||(43021922-43021976)
chr4 (283-347)||(46104202-46104266)
[»] chr3 (16 HSPs)
chr3 (283-347)||(29530561-29530625)
chr3 (283-347)||(19368941-19369005)
chr3 (282-347)||(28981817-28981882)
chr3 (294-344)||(11955528-11955578)
chr3 (283-344)||(35855227-35855288)
chr3 (283-347)||(8528103-8528167)
chr3 (283-347)||(26102150-26102214)
chr3 (294-340)||(22473678-22473724)
chr3 (282-347)||(40831926-40831991)
chr3 (283-347)||(22519212-22519276)
chr3 (283-330)||(8393586-8393633)
chr3 (283-330)||(18682512-18682559)
chr3 (282-347)||(11602164-11602229)
chr3 (283-347)||(19895645-19895709)
chr3 (283-330)||(4139364-4139411)
chr3 (285-347)||(26777850-26777912)
[»] chr2 (12 HSPs)
chr2 (283-347)||(19486212-19486276)
chr2 (283-344)||(17836990-17837051)
chr2 (286-347)||(19486111-19486172)
chr2 (283-344)||(32677186-32677247)
chr2 (294-344)||(9920912-9920962)
chr2 (283-347)||(10876571-10876633)
chr2 (283-347)||(28607244-28607308)
chr2 (283-347)||(42781034-42781098)
chr2 (283-347)||(2952780-2952844)
chr2 (283-347)||(9545775-9545839)
chr2 (283-347)||(10050189-10050253)
chr2 (283-327)||(18096514-18096558)
[»] chr7 (15 HSPs)
chr7 (283-344)||(29467774-29467835)
chr7 (283-347)||(34872192-34872256)
chr7 (290-347)||(35156995-35157052)
chr7 (283-344)||(44804543-44804604)
chr7 (294-344)||(3791513-3791563)
chr7 (291-344)||(24684636-24684689)
chr7 (290-347)||(29684113-29684170)
chr7 (283-347)||(11840447-11840511)
chr7 (283-347)||(21600970-21601034)
chr7 (283-347)||(39651148-39651212)
chr7 (283-330)||(688086-688133)
chr7 (290-347)||(9143506-9143563)
chr7 (283-347)||(49146122-49146186)
chr7 (283-347)||(17169047-17169111)
chr7 (283-347)||(48529933-48529997)
[»] scaffold0385 (1 HSPs)
scaffold0385 (291-344)||(8303-8356)
[»] chr6 (10 HSPs)
chr6 (283-344)||(4897497-4897558)
chr6 (283-347)||(9737752-9737816)
chr6 (283-330)||(6969312-6969359)
chr6 (282-347)||(25529263-25529328)
chr6 (282-347)||(33328277-33328342)
chr6 (283-347)||(9981259-9981323)
chr6 (290-347)||(24443957-24444014)
chr6 (282-347)||(35133196-35133260)
chr6 (283-347)||(1218541-1218605)
chr6 (283-347)||(4107977-4108041)
[»] scaffold0009 (2 HSPs)
scaffold0009 (283-344)||(225458-225519)
scaffold0009 (283-346)||(108570-108633)
[»] scaffold0381 (1 HSPs)
scaffold0381 (291-341)||(9600-9650)
[»] scaffold0057 (1 HSPs)
scaffold0057 (283-347)||(20579-20643)
[»] scaffold0051 (1 HSPs)
scaffold0051 (283-347)||(62085-62149)
[»] scaffold0759 (1 HSPs)
scaffold0759 (291-330)||(5908-5947)


Alignment Details
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 40587756 - 40587695
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  40587756 atgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 40587695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 25346057 - 25346121
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  25346057 atgtccattgaatttaccattttgcctctataaggggcaatttggtaatctacttattggttgag 25346121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 36776427 - 36776491
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  36776427 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 36776491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 24053937 - 24054001
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| |||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||    
T  24053937 atgtcccttgaatttaccattttgctcctataaggggcaatttggtaatctacttattggttgag 24054001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 41972979 - 41973043
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  41972979 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctactaattggttgag 41973043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 8760732 - 8760785
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  8760732 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8760785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 25836321 - 25836268
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  25836321 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 25836268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 1942820 - 1942873
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  1942820 tgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 1942873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 40616159 - 40616094
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| |||||||||||||||||  |||||| | ||||||||||||||||||| ||||||||||    
T  40616159 catgtcccttgaatttaccattttgctcctataagaggcaatttggtaatctactaattggttgag 40616094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 32844182 - 32844233
Alignment:
Q  293 aatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||| ||| ||| |||||||||||||||||||||||||||||    
T  32844182 aatttaccattttgccccgataaggggcaatttggtaatctacttattggtt 32844233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 8162831 - 8162781
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattg 341  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  8162831 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 8162781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 42245789 - 42245732
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| ||||||||| ||||||| |||| |||||| ||||||||||||||||||||    
T  42245789 ttgaattcaccattttgcccctataaggggtaatttgataatctacttattggttgag 42245732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 9472175 - 9472238
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||||||||    
T  9472175 atgtcccttgaaattaccattttgcctctataaggg-caatttggtaatctacttattggttgag 9472238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 290 - 336
Target Start/End: Original strand, 45435020 - 45435066
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctact 336  Q
    ||||||||||||||||| || |||| |||||||||||||||||||||    
T  45435020 ttgaatttaccattttgcccttataaggggcaatttggtaatctact 45435066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 44389070 - 44389005
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| ||||||||||||||||  || |||| |||| |||||||||||||| | ||||||||||    
T  44389070 catgtcccttgaatttaccatttttcccttataaggggtaatttggtaatctattaattggttgag 44389005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 18378866 - 18378802
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||| ||||||| | ||||  |||||||||||||||  || ||||||||||||    
T  18378866 atgtcctttgaatttatcattttgcctctattaggggcaatttggtaaattaattattggttgag 18378802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 330
Target Start/End: Complemental strand, 25620779 - 25620731
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    |||||||||||| ||||| |||||| ||||||  |||||||||||||||    
T  25620779 catgtccattgattttactattttgcccctatgaggggcaatttggtaa 25620731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 38894778 - 38894839
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  38894778 atgtccattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 38894839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 46626388 - 46626324
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  46626388 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 46626324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 33075720 - 33075659
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  33075720 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 33075659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 19322408 - 19322344
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||    
T  19322408 atgtcccttgaatttaccattttgcccctataaggggcaatttggtattctacttattggttgag 19322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 1826816 - 1826877
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  1826816 atgtcccttgaatttaccattttggctctataaggggcaatttggtaatctatttattggtt 1826877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 22198971 - 22198910
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  22198971 atgtcccttgaatttatcattttgcccctataaggggcaatttggtaatctacttattggtt 22198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 47134727 - 47134791
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||  |||| ||||||||||    
T  47134727 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 47134791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 29844934 - 29844884
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  29844934 atttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29844884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 10766220 - 10766270
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  10766220 atttaccattttgcccctataagggtcaatttggtaatctacttattggtt 10766270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 28570756 - 28570806
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattg 341  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  28570756 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 28570806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 42678405 - 42678458
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||  ||||||| ||||||||||| |||||||||||||||||    
T  42678405 tgaatttaccattttatccctataaggggcaatttgataatctacttattggtt 42678458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 50557849 - 50557913
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||  |||||||||||||||| || |||| ||||||||||||||||||||| ||||||||||    
T  50557849 catgtcccatgaatttaccattttgtcc-tataaggggcaatttggtaatctactaattggttgag 50557913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 16300412 - 16300476
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| |||||||||||||||||  |||||| |||||||||||||||  |||| ||||||||||    
T  16300412 atgtcccttgaatttaccattttgctcctataaggggcaatttggtaaattactaattggttgag 16300476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 19400753 - 19400818
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| ||||||||||||||||| || |||| |||| |||| ||||||||| | ||||||||||    
T  19400753 catgtcccttgaatttaccattttgcccatataaggggtaattcggtaatctattaattggttgag 19400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 1367314 - 1367378
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||  || ||||||| ||||    
T  1367314 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 1367378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 52306102 - 52306156
Alignment:
Q  293 aatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||| ||||||| ||||||||||| |||  |||| ||||||||||    
T  52306102 aatttaccattttgcccctataaggggcaatttgataaattactaattggttgag 52306156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 17364660 - 17364603
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||||||||| ||||||  |||||||||||||||  || ||||||| ||||    
T  17364660 ttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 17364603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 51971336 - 51971272
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| ||||| ||||||||||| |||||||  ||| |||||||||||||| | ||||||||||    
T  51971336 catgtcccttgaagttaccattttgtccctata-agggtaatttggtaatctattaattggttgag 51971272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 4890121 - 4890185
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| | ||||  |||||||||||||||  || ||||||| ||||    
T  4890121 atgtcctttgaatttaccattttgcctctattaggggcaatttggtaaattaattattggctgag 4890185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 5426239 - 5426303
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||| |||||||||||| || || | |||||||||||||||  |||  ||||||||||    
T  5426239 atgtccattgattttaccattttgcccttagaaggggcaatttggtaaattacaaattggttgag 5426303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 29188364 - 29188300
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||   ||||||||||||||  || ||||||| ||||    
T  29188364 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 29188300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 33359723 - 33359787
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||   ||||||||||||||  || ||||||| ||||    
T  33359723 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 33359787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 43116067 - 43116119
Alignment:
Q  279 atacatgtccattgaatttaccattttggccctatatggggcaatttggtaat 331  Q
    ||||||||||||||||||| | |||||| |||||   ||||||||||||||||    
T  43116067 atacatgtccattgaatttccaattttgcccctaggaggggcaatttggtaat 43116119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 30754432 - 30754496
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  30754432 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30754496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 36887032 - 36886968
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||    
T  36887032 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattgattgag 36886968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 6305505 - 6305452
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  6305505 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 6305452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 43138602 - 43138549
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  43138602 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 43138549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 282 - 346
Target Start/End: Complemental strand, 12422409 - 12422345
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttga 346  Q
    ||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||| |||||||||    
T  12422409 catgtcctttgattttaccattttgcccctataaggggcaatttggtaatctactaattggttga 12422345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 42977883 - 42977833
Alignment:
Q  296 ttaccattttggccctatatggggcaatttggtaatctacttattggttga 346  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  42977883 ttaccattttgcccctataaggggcaatttggtaatctacttattggttga 42977833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 17643449 - 17643385
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||| ||||||| || |||| ||||||||||||||||||| ||||||||||||    
T  17643449 atgtcccttgaatttatcattttgcccttataaggggcaatttggtaatctatttattggttgag 17643385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 754500 - 754450
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattg 341  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  754500 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 754450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 12592524 - 12592471
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||| |||  ||||||| |||||||||||||||||||||||||||||    
T  12592524 tgaatttaccagtttacccctataaggggcaatttggtaatctacttattggtt 12592471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 3088095 - 3088031
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||  || | ||||||||||    
T  3088095 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 3088031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 25698781 - 25698717
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||  || ||||||||||||    
T  25698781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 25698717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 30140525 - 30140589
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||   ||| ||||||||||  |||| ||||||||||    
T  30140525 atgtcctttgaatttaccattttgcccctattaagggtaatttggtaaattactaattggttgag 30140589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 33709877 - 33709813
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||  |||||||  ||||||||||||||  || | ||||||||||    
T  33709877 atgtcccttgaatttaccattttacccctataaagggcaatttggtaaattagtaattggttgag 33709813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 41689298 - 41689362
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||   ||||||||||||||  || ||||||| ||||    
T  41689298 atgtcctttgaatttaccattttgcccctattatgggcaatttggtaaattaattattggctgag 41689362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 3757749 - 3757813
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  3757749 atgttcattgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 3757813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 13171648 - 13171712
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  13171648 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 13171712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 50120021 - 50119957
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  50120021 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 50119957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 30529335 - 30529278
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  30529335 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 30529278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 24547354 - 24547418
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||    
T  24547354 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggttgag 24547418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 51347511 - 51347574
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttga 346  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||    
T  51347511 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggttga 51347574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 8956947 - 8957000
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  8956947 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8957000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 8986919 - 8986972
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  8986919 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8986972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 37349817 - 37349870
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  37349817 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 37349870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 36743265 - 36743201
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| || |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  36743265 atgtcccttaaatttaccattttgtctctataaggggcaatttggtaatctacttattggttgag 36743201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 53991604 - 53991554
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  53991604 atttaccattttgcccctataaggggcaatttggtaatctacttattggtt 53991554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 17730463 - 17730520
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  17730463 ttgaatttaccattttgctcctataaggggcaatttggtaatctactaattggttgag 17730520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 24948350 - 24948289
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| |||||||||||||||||  |||||| |||||||||||| ||||||||||||||||    
T  24948350 atgtcctttgaatttaccattttgctcctataaggggcaatttggaaatctacttattggtt 24948289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 29712393 - 29712454
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| || |||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  29712393 atgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 29712454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 3821262 - 3821198
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||  |||| ||||||||||    
T  3821262 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaaattactaattggttgag 3821198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 20588585 - 20588649
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||| ||||||||| | ||||| ||||||||||||||||| ||||||||||||||    
T  20588585 atgtcccttgaattcaccattttgcctctataaggggcaatttggtaatccacttattggttgag 20588649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 578657 - 578607
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  578657 atttaccattttgcccctataagggacaatttggtaatctacttattggtt 578607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 9888945 - 9888895
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattg 341  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  9888945 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9888895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 35716351 - 35716305
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttatt 340  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  35716351 atttaccattttgcccctataaggggcaatttggtaatctacttatt 35716305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 39406288 - 39406234
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||    
T  39406288 ttgaatttaccatttagcccctataaggggtaatttggtaatctacttattggtt 39406234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 39716781 - 39716717
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||  || ||||||||||||    
T  39716781 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggttgag 39716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 5752474 - 5752521
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  5752474 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 5752521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 16896007 - 16896072
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| |||||||||| |||||| || |||| ||||| ||||||||||||| | ||||||||||    
T  16896007 catgtcccttgaatttacaattttgcccttataaggggctatttggtaatctattaattggttgag 16896072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 291 - 344
Target Start/End: Original strand, 50033712 - 50033764
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| || |||| ||| |||||||||||||||||||||||||    
T  50033712 tgaatttaccattttgcccttataaggg-caatttggtaatctacttattggtt 50033764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 331
Target Start/End: Complemental strand, 35833477 - 35833429
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaat 331  Q
    ||||||||||| |||||||||||| ||||||  ||||||||||||||||    
T  35833477 atgtccattgattttaccattttgcccctatgaggggcaatttggtaat 35833429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 12682819 - 12682772
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    ||||||||||| |||||||||||| ||||||  |||||||||||||||    
T  12682819 atgtccattgattttaccattttgcccctatgaggggcaatttggtaa 12682772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 347
Target Start/End: Original strand, 15704144 - 15704198
Alignment:
Q  293 aatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||| ||||||| |||| ||||||||||  |||| ||||||||||    
T  15704144 aatttaccattttgcccctataaggggaaatttggtaaattactaattggttgag 15704198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 344
Target Start/End: Original strand, 43021922 - 43021976
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||| | ||||  || ||||||||||||||||||||||||||    
T  43021922 ttgaatttaccatcttgcctctattaggtgcaatttggtaatctacttattggtt 43021976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 46104202 - 46104266
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||| |||||||||||| ||| ||  |||||||||||||||  |||  ||||||||||    
T  46104202 atgtccattgattttaccattttgccccaatgaggggcaatttggtaaattacaaattggttgag 46104266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 29530625 - 29530561
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  29530625 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 29530561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 19369005 - 19368941
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  19369005 atgtcccttgattttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19368941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 28981882 - 28981817
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| ||||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||    
T  28981882 catgtcccttgaatttaccattttgcccctataaggggcaatttggtaatcaactaattggttgag 28981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 11955578 - 11955528
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  11955578 atttaccattttgcccctataaggggcaatttggtaatctacttattggtt 11955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 35855227 - 35855288
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| || |||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  35855227 atgtcccttaaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 35855288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 8528167 - 8528103
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| |||||||||||||| || ||||||| |||||||||||||||| || ||||||||||||    
T  8528167 atgtcccttgaatttaccattctgtccctataaggggcaatttggtaatatatttattggttgag 8528103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 26102214 - 26102150
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| | || ||||||||||||| |||||||||||||    
T  26102214 atgtcctttgaatttaccattttgcccctataagaggtaatttggtaatctgcttattggttgag 26102150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 22473678 - 22473724
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttatt 340  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  22473678 atttaccattttgcccctataaggggcaatttggtaatctacttatt 22473724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 40831991 - 40831926
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| |||||||||||||||||  |||||| ||| ||||| ||||||||||| ||||||||||    
T  40831991 catgtcccttgaatttaccattttgctcctataagggacaattcggtaatctactaattggttgag 40831926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 22519212 - 22519276
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||||||||| ||||||| |||||||||| ||||  || | ||||||||||    
T  22519212 atgtccattgaatttaccattttgcccctataaggggcaatttagtaaattattaattggttgag 22519276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 8393586 - 8393633
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  8393586 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 8393633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 18682512 - 18682559
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  18682512 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 18682559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 11602229 - 11602164
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| |||| |||||||||||| ||||||| |||||||||  |||||||| | ||||||||||    
T  11602229 catgtccgttgattttaccattttgcccctataaggggcaattcagtaatctattaattggttgag 11602164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 19895709 - 19895645
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||||||||| || ||||  ||||||||||||||  || | ||||||||||    
T  19895709 atgtccattgaatttaccattttgcccttataaagggcaatttggtaaattagtaattggttgag 19895645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 4139411 - 4139364
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    ||||||||||| |||||||||||| ||||||  |||||||||||||||    
T  4139411 atgtccattgattttaccattttgtccctattaggggcaatttggtaa 4139364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 26777912 - 26777850
Alignment:
Q  285 gtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||| |||||||||||| ||||||  |||||||||||||||  |||  ||||||||||    
T  26777912 gtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 26777850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 19486212 - 19486276
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  19486212 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggttgag 19486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 17836990 - 17837051
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  17836990 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 17837051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 19486172 - 19486111
Alignment:
Q  286 tccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  19486172 tccattgaatttatcattttgcccctataaggggcaatttggtaatctacttattggttgag 19486111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 32677247 - 32677186
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  32677247 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 32677186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 9920962 - 9920912
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  9920962 atttaccattttgcccctataaggggcaatttggtaatctacttattggtt 9920912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 10876633 - 10876571
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||    
T  10876633 atgtcccttgaatttaccattttgcccctaa--ggggcaatttggtaatctacttattggttgag 10876571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 28607244 - 28607308
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||  |||  ||||||||||    
T  28607244 atgtccattgaatttaccattttgtccctataaggggcaatttggtaaattacaaattggttgag 28607308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 42781034 - 42781098
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||| ||||||| |||| || ||||||||||||||||||| ||||||||||||    
T  42781034 atgtcccttgaatttatcattttgtccctgtaaggggcaatttggtaatctatttattggttgag 42781098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 2952780 - 2952844
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||  || ||||||| ||||    
T  2952780 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 2952844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 9545839 - 9545775
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||  || ||||||| ||||    
T  9545839 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 9545775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 10050253 - 10050189
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  ||||||||||| |||  |||| ||||||||||    
T  10050253 atgtcctttgaatttaccattttgcccctattaggggcaatttgataaattactaattggttgag 10050189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 327
Target Start/End: Original strand, 18096514 - 18096558
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttgg 327  Q
    |||||| ||||||||||||||||| ||||||| |||| |||||||    
T  18096514 atgtcctttgaatttaccattttgcccctataaggggtaatttgg 18096558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 29467774 - 29467835
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  29467774 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 29467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 34872192 - 34872256
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  34872192 atgtcctttgaacttaccattttgtccctataaggggcaatttggtaatctacttattggttgag 34872256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 35157052 - 35156995
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||    
T  35157052 ttgaatttaccattttgcccctataaggggcaatttggtaatctacttatcggttgag 35156995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 44804543 - 44804604
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  44804543 atgtcccttgaatttaccattttgtccctataaggggcaatttggtaatctatttattggtt 44804604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 3791513 - 3791563
Alignment:
Q  294 atttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  3791513 atttaccattttgcccctataaggggcaatttggtaatctacttattggtt 3791563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 24684689 - 24684636
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| | ||||| |||||||||||||||||||||||||||||    
T  24684689 tgaatttaccattttgcctctataaggggcaatttggtaatctacttattggtt 24684636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 29684170 - 29684113
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||||||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  29684170 ttgaatttaccattttacccctataaggggcaatttggtaatctactaattggttgag 29684113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 11840511 - 11840447
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||  || | ||||||||||    
T  11840511 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 11840447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 21601034 - 21600970
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||  || | ||||||||||    
T  21601034 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattattaattggttgag 21600970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 39651212 - 39651148
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||  |||| ||||||||||    
T  39651212 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattactaattggttgag 39651148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 330
Target Start/End: Original strand, 688086 - 688133
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  688086 atgtcctttgaatttaccattttgcccctataaggggcaatttggtaa 688133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 9143506 - 9143563
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||||||||| ||||||| |||||||||||||||  |||| ||| ||||||    
T  9143506 ttgaatttaccattttgcccctataaggggcaatttggtaaattactaatttgttgag 9143563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 49146186 - 49146122
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||| |||||||||||| ||||||  |||||||||||||||  |||  ||||||||||    
T  49146186 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 49146122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 17169047 - 17169111
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||   ||||||||||||||  || ||||||| ||||    
T  17169047 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 17169111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 48529997 - 48529933
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||| ||||||||||| ||||||  |||||||||||||||  || ||||||| ||||    
T  48529997 atgtcctttgaaattaccattttgcccctattgggggcaatttggtaaattaattattggctgag 48529933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 344
Target Start/End: Complemental strand, 8356 - 8303
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||    
T  8356 tgaatttaccattttgcccctataaggggcaatttggtaatctacttattggtt 8303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 4897558 - 4897497
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||    
T  4897558 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaatctatttattggtt 4897497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 9737816 - 9737752
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||| ||||||||||||    
T  9737816 atgtcccttgaatttaccattttgtccctataaggggcaatttgataatctatttattggttgag 9737752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 6969359 - 6969312
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||    
T  6969359 atgtcccttgaatttaccattttgcccctataaggggcaatttggtaa 6969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 25529263 - 25529328
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| |||  ||||| ||||||  |||||| ||||||||||||||||||||| ||||||||||    
T  25529263 catgtccgttgcttttacgattttgctcctataaggggcaatttggtaatctactaattggttgag 25529328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 347
Target Start/End: Complemental strand, 33328342 - 33328277
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| || ||||||||||||||  |||| | |||||||||||||| |||||| ||||||||||    
T  33328342 catgtcctttaaatttaccattttgctcctacaaggggcaatttggtagtctactaattggttgag 33328277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 9981323 - 9981259
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||| ||||||||||||||||||  ||||||| |||||||||||||||  | || ||||||||||    
T  9981323 atgttcattgaatttaccattttacccctataaggggcaatttggtaaattgctaattggttgag 9981259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 24443957 - 24444014
Alignment:
Q  290 ttgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||||||||| ||||||  |||||||||||||||  || ||||||| ||||    
T  24443957 ttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 24444014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 347
Target Start/End: Original strand, 35133196 - 35133260
Alignment:
Q  282 catgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||| || |||||||||||||| | |||||  |||||||||| ||||||||| ||||||||||    
T  35133196 catgtcctttaaatttaccattttgcctctata-agggcaatttgataatctactaattggttgag 35133260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 1218541 - 1218605
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||   ||||||||||||||  || ||||||| ||||    
T  1218541 atgtcctttgaatttaccattttgcccctattaagggcaatttggtaaattaattattggctgag 1218605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 4107977 - 4108041
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||| |||||||||||  ||||||  |||||||||||||||  |||  ||||||||||    
T  4107977 atgtccattgattttaccatttttcccctatgaggggcaatttggtaaattacaaattggttgag 4108041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 283 - 344
Target Start/End: Original strand, 225458 - 225519
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggtt 344  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||  |||| |||||||    
T  225458 atgtccattgaatttaccattttgcccctataaggggcaatttggtaaattactaattggtt 225519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 346
Target Start/End: Original strand, 108570 - 108633
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttga 346  Q
    |||||| ||||||||||||||||| ||| ||| |||| ||||||||||||||| ||||||||||    
T  108570 atgtcccttgaatttaccattttgtccccataaggggtaatttggtaatctacgtattggttga 108633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 9600 - 9650
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaatctacttattg 341  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  9600 tgaatttaccattttgcccctataagggtcaatttggtaatctacttattg 9650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Complemental strand, 20643 - 20579
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||  || ||||||| ||||    
T  20643 atgtcctttgaatttaccattttgcccctattaggggcaatttggtaaattaattattggctgag 20579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 347
Target Start/End: Original strand, 62085 - 62149
Alignment:
Q  283 atgtccattgaatttaccattttggccctatatggggcaatttggtaatctacttattggttgag 347  Q
    ||||||||||| |||||||||||| ||||||  |||||||||||||||  |||  ||||||||||    
T  62085 atgtccattgattttaccattttgcccctatgaggggcaatttggtaaattacaaattggttgag 62149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0759 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0759
Description:

Target: scaffold0759; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 330
Target Start/End: Complemental strand, 5947 - 5908
Alignment:
Q  291 tgaatttaccattttggccctatatggggcaatttggtaa 330  Q
    |||||||||||||||| ||||||| |||||||||||||||    
T  5947 tgaatttaccattttgcccctataaggggcaatttggtaa 5908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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