View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1542_low_6 (Length: 370)

Name: NF1542_low_6
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1542_low_6
NF1542_low_6
[»] chr5 (15 HSPs)
chr5 (45-357)||(38167723-38168035)
chr5 (45-357)||(38199069-38199381)
chr5 (58-218)||(38156820-38156980)
chr5 (58-218)||(38178247-38178407)
chr5 (58-218)||(38205471-38205631)
chr5 (72-218)||(38221149-38221300)
chr5 (1-48)||(38168404-38168451)
chr5 (1-48)||(38198653-38198700)
chr5 (56-119)||(38149790-38149853)
chr5 (1-41)||(38454432-38454472)
chr5 (59-122)||(1305639-1305702)
chr5 (5-41)||(38179519-38179555)
chr5 (5-41)||(38191576-38191612)
chr5 (5-41)||(38206743-38206779)
chr5 (5-41)||(38218801-38218837)
[»] chr7 (1 HSPs)
chr7 (61-139)||(25268313-25268391)
[»] chr6 (2 HSPs)
chr6 (81-139)||(30875690-30875748)
chr6 (70-123)||(2591205-2591258)
[»] chr4 (1 HSPs)
chr4 (71-145)||(2995611-2995685)
[»] chr3 (1 HSPs)
chr3 (99-151)||(43246161-43246213)
[»] chr1 (1 HSPs)
chr1 (70-136)||(2239976-2240042)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 45 - 357
Target Start/End: Complemental strand, 38168035 - 38167723
Alignment:
Q  45 tatattacggttaattacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatcttcatt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38168035 tatattacggttaattacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcatt 38167936  T
Q  145 aaactcatttacattacatgtatcttagaatttcttttcataatgccacattttaatcattctaacaagaggaaggactaataagacttgtcaaatagag 244  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38167935 aaactcatttacattacatgcatcttagaatttcttttcataatgccacattttaatcattctaacaagaggaaggactaataagacttatcaaatagag 38167836  T
Q  245 ttataaaaaagtatactgtcagataggttgagcaattccctttgaaaaccttctaaaatggctgatctacagggagccatcacccaaatcaatatcaata 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38167835 ttataaaaaagtatactgtcagataggttgagcaattccctttgaaaaccttctaaaatggctgatctacagggagccatcacccaaatccatatcaata 38167736  T
Q  345 gagtgagatatga 357  Q
    |||||||||||||    
T  38167735 gagtgagatatga 38167723  T

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Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 45 - 357
Target Start/End: Original strand, 38199069 - 38199381
Alignment:
Q  45 tatattacggttaattacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatcttcatt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38199069 tatattacggttaattacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcatt 38199168  T
Q  145 aaactcatttacattacatgtatcttagaatttcttttcataatgccacattttaatcattctaacaagaggaaggactaataagacttgtcaaatagag 244  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38199169 aaactcatttacattacatgcatcttagaatttcttttcataatgccacattttaatcattctaacaagaggaaggactaataagacttatcaaatagag 38199268  T
Q  245 ttataaaaaagtatactgtcagataggttgagcaattccctttgaaaaccttctaaaatggctgatctacagggagccatcacccaaatcaatatcaata 344  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  38199269 ttataaaaaagtatactgtcagataggttgagcaattccctttgaaaaccttctaaaatggctgatctacagggagccatcacccaaatccatatcaata 38199368  T
Q  345 gagtgagatatga 357  Q
    |||||||||||||    
T  38199369 gagtgagatatga 38199381  T

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Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 58 - 218
Target Start/End: Complemental strand, 38156980 - 38156820
Alignment:
Q  58 attacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatcttcattaaactcatttaca 157  Q
    |||||||| ||  ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  38156980 attacaaaatacacttacgtgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttcattaaactcatttaca 38156881  T
Q  158 ttacatgtatcttagaatttcttttcataatgccacattttaatcattctaacaagaggaa 218  Q
    |||||||||| ||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  38156880 ttacatgtatgttaaaatttctattcataatgcaacattttaatcattctaacaagaggaa 38156820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 38178247 - 38178407
Alignment:
Q  58 attacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatcttcattaaactcatttaca 157  Q
    |||||||||||   || |||||||||||||||||||||||||||||||| | |||||||||||||| ||||| || | ||||||| ||||||||||||||    
T  38178247 attacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgataacggatcttcaataaactcatttaca 38178346  T
Q  158 ttacatgtatcttagaatttcttttcataatgccacattttaatcattctaacaagaggaa 218  Q
    |||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||    
T  38178347 ttacatgtatcttaaaattattattcataatgccacattttaatcattctaacaagaggaa 38178407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 58 - 218
Target Start/End: Original strand, 38205471 - 38205631
Alignment:
Q  58 attacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatcttcattaaactcatttaca 157  Q
    |||||||||||   || |||||||||||||||||||||||||||||||| | |||||||||||||| ||||| || | ||||||| ||||||||||||||    
T  38205471 attacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgataacggatcttcaataaactcatttaca 38205570  T
Q  158 ttacatgtatcttagaatttcttttcataatgccacattttaatcattctaacaagaggaa 218  Q
    |||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||    
T  38205571 ttacatgtatcttaaaattattattcataatgccacattttaatcattctaacaagaggaa 38205631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 218
Target Start/End: Complemental strand, 38221300 - 38221149
Alignment:
Q  72 ttacgtgacaatatc-atgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatcttcattaaactcatttacatta----catgta 166  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||| |||||||||||||    ||||||    
T  38221300 ttacgtgacaatatatatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttcattaagctcatttacattacatgcatgta 38221201  T
Q  167 tcttagaatttcttttcataatgccacattttaatcattctaacaagaggaa 218  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||||||||||    
T  38221200 tcttaaaatttctattcataatgcaacattttaatcattctaacaagaggaa 38221149  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 38168451 - 38168404
Alignment:
Q  1 acattgacaaactcttgagtagaaacaaaattatcaccaattcatata 48  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  38168451 acattgacgaactcttgagtagaaacaaaattatcaccaattcatata 38168404  T

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Target: chr5; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 38198653 - 38198700
Alignment:
Q  1 acattgacaaactcttgagtagaaacaaaattatcaccaattcatata 48  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||    
T  38198653 acattgacgaactcttgagtagaaacaaaattatcaccaattcatata 38198700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 38149853 - 38149790
Alignment:
Q  56 taattacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactat 119  Q
    |||||||||||||  ||||||||  ||||||| |||||||||  ||||||||||||||||||||    
T  38149853 taattacaaagtacacttacgtggtaatatcacgagttttcatgggatgttggtgtaaaactat 38149790  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38454432 - 38454472
Alignment:
Q  1 acattgacaaactcttgagtagaaacaaaattatcaccaat 41  Q
    |||||||||||||||||||||||| ||| ||||||||||||    
T  38454432 acattgacaaactcttgagtagaatcaagattatcaccaat 38454472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 122
Target Start/End: Original strand, 1305639 - 1305702
Alignment:
Q  59 ttacaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactatttt 122  Q
    ||||||||||| |||| ||| ||||||||||| |||||| ||||| ||| ||| ||||||||||    
T  1305639 ttacaaagtagacttatgtggcaatatcatgaattttcattggatattgctgtgaaactatttt 1305702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 38179519 - 38179555
Alignment:
Q  5 tgacaaactcttgagtagaaacaaaattatcaccaat 41  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  38179519 tgacaaactcttgagtagaatcaagattatcaccaat 38179555  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 38191612 - 38191576
Alignment:
Q  5 tgacaaactcttgagtagaaacaaaattatcaccaat 41  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  38191612 tgacaaactcttgagtagaatcaagattatcaccaat 38191576  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 38206743 - 38206779
Alignment:
Q  5 tgacaaactcttgagtagaaacaaaattatcaccaat 41  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  38206743 tgacaaactcttgagtagaatcaagattatcaccaat 38206779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 38218837 - 38218801
Alignment:
Q  5 tgacaaactcttgagtagaaacaaaattatcaccaat 41  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  38218837 tgacaaactcttgagtagaatcaagattatcaccaat 38218801  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 25268313 - 25268391
Alignment:
Q  61 acaaagtaggcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatct 139  Q
    |||||||||||||| ||| ||||||||||| |||||| | ||||| ||| |||||||| |||| || || |||||||||    
T  25268313 acaaagtaggcttatgtggcaatatcatgaattttcattagatgtcggtataaaactaatttacactgataatgcatct 25268391  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 30875748 - 30875690
Alignment:
Q  81 aatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatct 139  Q
    ||||||||||||| ||| ||||||| ||||||||||| ||| | |||||||||||||||    
T  30875748 aatatcatgagttctcattggatgtcggtgtaaaactgtttgataccgacaatgcatct 30875690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 2591205 - 2591258
Alignment:
Q  70 gcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactatttta 123  Q
    |||||| ||| ||||||||||||| ||||||||||  | |||||||||||||||    
T  2591205 gcttacatgataatatcatgagttctcaatggatgacgatgtaaaactatttta 2591258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 145
Target Start/End: Complemental strand, 2995685 - 2995611
Alignment:
Q  71 cttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcatcttcatta 145  Q
    |||| ||||||| |||||||||||| | | ||||||| |||||||||| |||| ||||| ||||||||| |||||    
T  2995685 cttaagtgacaacatcatgagtttttattagatgttgatgtaaaactagtttacaccgataatgcatctccatta 2995611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 43246213 - 43246161
Alignment:
Q  99 tggatgttggtgtaaaactattttagaccgacaatgcatcttcattaaactca 151  Q
    |||||| || |||||||||| |||| |||| ||||||||||||||||||||||    
T  43246213 tggatgatgttgtaaaactagtttacaccgtcaatgcatcttcattaaactca 43246161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 136
Target Start/End: Original strand, 2239976 - 2240042
Alignment:
Q  70 gcttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgca 136  Q
    ||||||||| ||||||| |||||| ||| | ||||| | |||||||||| |||| ||||||||||||    
T  2239976 gcttacgtggcaatatcttgagttctcattagatgtcgatgtaaaactagtttacaccgacaatgca 2240042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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