View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_7 (Length: 342)
Name: NF1542_low_7
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 8096280 - 8096153
Alignment:
| Q |
7 |
tcgaagaatataaacatcaatatgaaggaagaaaaaggaagaaaaacacaaaatgttgtttaaattgacttactctggatgaaatagcaactcttaattc |
106 |
Q |
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| T |
8096280 |
tcgaacaaaataaacatcaatatgaaggaagaaaaaggaagaaaaacacaaaatgttgtttaaattgacttactctggatgaaaaagcaactcttaattc |
8096181 |
T |
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| Q |
107 |
attccactaatcaaaataataactttac |
134 |
Q |
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| T |
8096180 |
attccactaatcaaaagagtaactttac |
8096153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 191
Target Start/End: Complemental strand, 7308826 - 7308743
Alignment:
| Q |
108 |
ttccactaatcaaaataataactttacataaagattttgatagcaattacaataatcaatcttcaaacctaattctaccatttt |
191 |
Q |
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| T |
7308826 |
ttccactaatcaaaagagtaactttacaaagagattctaaaaggaattacaagaaccaatcttcaaacctaattctagcatttt |
7308743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 7392849 - 7392922
Alignment:
| Q |
152 |
aattacaataatcaatcttcaaacctaattctaccattttttccgaatctcttcccgtgacaaatagactcaatg |
226 |
Q |
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| T |
7392849 |
aattacaagaatcagtcttcaaacctaattctacc-ttttttctaaatctctacccttgaccaagagactcaatg |
7392922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 152 - 191
Target Start/End: Complemental strand, 31005232 - 31005193
Alignment:
| Q |
152 |
aattacaataatcaatcttcaaacctaattctaccatttt |
191 |
Q |
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| T |
31005232 |
aattacaaaaatcattcttcaaacctaattctaccatttt |
31005193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 21334808 - 21334917
Alignment:
| Q |
111 |
cactaatcaaaataataactttacataaagattttgatagcaattacaataatcaatcttcaaacctaattctaccattttttccgaatctcttcccgtg |
210 |
Q |
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| T |
21334808 |
cactaatcaagagagtaactttacacaaagattccaaaaggaattacaagaaccagtcttcaaacctaattctacc-cttttcccaaatctcttctcgtg |
21334906 |
T |
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| Q |
211 |
acaaatagact |
221 |
Q |
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|| || ||||| |
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| T |
21334907 |
accaagagact |
21334917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 184
Target Start/End: Complemental strand, 36681752 - 36681691
Alignment:
| Q |
123 |
taataactttacataaagattttgatagcaattacaataatcaatcttcaaacctaattcta |
184 |
Q |
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||||||||||||| ||||||| | || |||||||| ||||||||||||||| |||||||| |
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| T |
36681752 |
taataactttacacaaagattccaaaagaaattacaagaatcaatcttcaaacataattcta |
36681691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 12777037 - 12776985
Alignment:
| Q |
152 |
aattacaataatcaatcttcaaacctaattctaccattttttccgaatctcttc |
205 |
Q |
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| T |
12777037 |
aattacaagaatcaatcttaaaacctaattctacccttttct-cgaatctcttc |
12776985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 154 - 186
Target Start/End: Original strand, 4144783 - 4144815
Alignment:
| Q |
154 |
ttacaataatcaatcttcaaacctaattctacc |
186 |
Q |
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|||||| |||||||||||||||||||||||||| |
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| T |
4144783 |
ttacaagaatcaatcttcaaacctaattctacc |
4144815 |
T |
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