View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1542_low_8 (Length: 330)
Name: NF1542_low_8
Description: NF1542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1542_low_8 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 324
Target Start/End: Complemental strand, 597051 - 596745
Alignment:
| Q |
18 |
aagccgagtaaatcatttttaagcacaaacaaagttcatgtcaacaaattttaatattacaacaacaatcattttcaactnnnnnnnngaacattacaaa |
117 |
Q |
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| T |
597051 |
aagcggagtaaatcatttttaagcacaaacaaagttcatgtcaacaaattttaatattacaacaacaatcattttcaactaaaaaaaagaacattacaaa |
596952 |
T |
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| Q |
118 |
tccaaacatttggaaattattaactccaaaatgactcatcatcttcttccttcaccaaagaggagcatcactcgtgaacccataagtactcatgaaccca |
217 |
Q |
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| T |
596951 |
tccaaacattcggaaattattaactccaaaatgactcatcatcttcttccttcaccaaagaggagcatcactcgtgaacccataagtactcatgaaccca |
596852 |
T |
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| Q |
218 |
aaaaccaaacaccccataaatctggaaatcctttaaactaaccctcgcaaactcatttgtgtgattaaaaataaaaactttgaaacaaatatagatccgt |
317 |
Q |
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| T |
596851 |
aaaaccaaacaccccataaatctggaaatcctttaaactaaccctcgcaaactcatttgtgtgattaaaaataaaaactttgaaacaaatatagatccgt |
596752 |
T |
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| Q |
318 |
aagagta |
324 |
Q |
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| T |
596751 |
aagagta |
596745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 26 - 249
Target Start/End: Original strand, 60476 - 60698
Alignment:
| Q |
26 |
taaatcatttttaagcacaaacaaagttcatgtcaacaaattttaatattacaacaacaatcattttcaactnnnnnnnngaacattacaaatccaaaca |
125 |
Q |
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| T |
60476 |
taaaccatttttaaggacaaacaaagtt-atgtcaataaattttaatattacaacaacaatcatcttcaactacaaataagaacattacaaatccaaaaa |
60574 |
T |
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| Q |
126 |
tttggaaattattaactccaaaatgactcatcatcttcttccttcaccaaagaggagcatcactcgtgaacccataagtactcatgaacccaaaaaccaa |
225 |
Q |
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| T |
60575 |
ttcagaaattattaactccaaaatgactcatcatcttcttccttcagcaaagaggagcatcactcatgaacccataagtactcatgaacccagaaaccaa |
60674 |
T |
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| Q |
226 |
acaccccataaatctggaaatcct |
249 |
Q |
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| T |
60675 |
acaccccataaatctggaaatcct |
60698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 26 - 249
Target Start/End: Complemental strand, 18300443 - 18300221
Alignment:
| Q |
26 |
taaatcatttttaagcacaaacaaagttcatgtcaacaaattttaatattacaacaacaatcattttcaactnnnnnnnn-gaacattacaaatccaaac |
124 |
Q |
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| T |
18300443 |
taaaccatttttaaggacaaacaa-gtt-atgtcaacaaattttaatattacaacaacaatcatcttcaactacaaaataagaacattacaaatccaaaa |
18300346 |
T |
|
| Q |
125 |
atttggaaattattaactccaaaatgactcatcatcttcttccttcaccaaagaggagcatcactcgtgaacccataagtactcatgaacccaaaaacca |
224 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
18300345 |
attcagaaattattaactccaaaatgactcatcatcttcttccttcaccgaagaggagcatcactcatgaacccataagtactcatgaacccagaaacca |
18300246 |
T |
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| Q |
225 |
aacaccccataaatctggaaatcct |
249 |
Q |
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| T |
18300245 |
aacaccccataaatctggaaatcct |
18300221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 49307148 - 49307201
Alignment:
| Q |
26 |
taaatcatttttaagcacaaacaaagttcatgtcaacaaattttaatattacaa |
79 |
Q |
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| T |
49307148 |
taaatcatttttaaacacaaacaaagttcatgtcaacaaactttaacattacaa |
49307201 |
T |
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