View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_high_1 (Length: 626)
Name: NF15430_high_1
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 609
Target Start/End: Complemental strand, 6528126 - 6527519
Alignment:
| Q |
1 |
gagagcaaatagaatgaagtctttcatattcgccgatataaaagcaaaggttaatgctacatatagcgaaaaatttgtcccgaggatatcccgacactga |
100 |
Q |
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| T |
6528126 |
gagagcaaatagaatgaagtctttcatattcgccgatataaaagcaaaggttaatgctacatatagcgaaaaatttgtcccgaggatatcccgacactga |
6528027 |
T |
|
| Q |
101 |
catgtgtactgagcgaattctagtacttagttccaaccacccatgtattgtgtgatatgaagatccaatggtgatgctacgttcgcaatgcattgtgaaa |
200 |
Q |
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| T |
6528026 |
catgtgtattgagcaaattctagtacttagttccaaccacccatgtattgtgtgatatgaagatccaatggtgatgctacgttcgcaatgcattgtgaaa |
6527927 |
T |
|
| Q |
201 |
gagtgttcgctatatatatagcaacactcaaaagcaaaatcctcttgttgcaccatattgattttattaggcaattttcttgtgacactaatgtcataaa |
300 |
Q |
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| T |
6527926 |
gtgtgttcgctatatata--gcaacactcaaaagcaaaatcctcttgttgcaccatattgattttattaggcaattttcttgtgacactaatgtcataaa |
6527829 |
T |
|
| Q |
301 |
-ggacaattgcaaaatggtcgaatgtttgacccgtcgtggctgtatataaaacgattagagtctcaatactaccaacaatctcaaacaatagtttatgtt |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6527828 |
aggacaattgcaaaatggtcgaatgtttgacccgtcgtggctgtatataaaacgattagagtctcaatactaccaacaatctcaaacaatagtttatgtt |
6527729 |
T |
|
| Q |
400 |
tccaatatttcaacactaactcgactaactgaatccaacttcaatgttggtgtgtattactcattggtggagatcaattgtctcacctctttcttataat |
499 |
Q |
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| T |
6527728 |
tccaatatttcaacactaactcgactaactgaatccaacttcaatgttggtgtgtattactcattggtggagatcaattgtctcacctctttcttataat |
6527629 |
T |
|
| Q |
500 |
tgtgagattttctaagcatcaagacacattcatccacctctgaaaatgtacctcttaaattttaactcatttgtatttatttgaaaatttgaattgattt |
599 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6527628 |
tgtgagattttctaagtatcaagacacattcatccacctctgaaaatgtacctcttaaattttaactcatttgtatttatttgaaaatttgaattgattt |
6527529 |
T |
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| Q |
600 |
ccctacaatt |
609 |
Q |
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| T |
6527528 |
ccctacaatt |
6527519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 543 - 602
Target Start/End: Original strand, 23976019 - 23976078
Alignment:
| Q |
543 |
aaatgtacctcttaaattttaactcatttgtatttatttgaaaatttgaattgatttccc |
602 |
Q |
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||||||| ||||||||||| || ||||| ||||||||| ||||||||||||||||||| |
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| T |
23976019 |
aaatgtatctcttaaatttccacctatttgcatttatttgtaaatttgaattgatttccc |
23976078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 548 - 602
Target Start/End: Original strand, 48365007 - 48365061
Alignment:
| Q |
548 |
tacctcttaaattttaactcatttgtatttatttgaaaatttgaattgatttccc |
602 |
Q |
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|||||||||||||| ||||| ||| |||||| || ||||||||||||||||||| |
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| T |
48365007 |
tacctcttaaatttctactcacttgcatttatatggaaatttgaattgatttccc |
48365061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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