View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_high_2 (Length: 623)
Name: NF15430_high_2
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 118 - 607
Target Start/End: Original strand, 46816576 - 46817070
Alignment:
| Q |
118 |
ttaagaagctcttagcagtatgaaaagtttaaacatgtataagcttgtattataatagaatagtgtaatgctaataaccttgaggactaggggttggaat |
217 |
Q |
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| T |
46816576 |
ttaagaagctcttagcagtatgaaaagtttaaacatgtataagcttgtattataatagaatagtgtaatgctaataaccttgaggactaggggttggaat |
46816675 |
T |
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| Q |
218 |
aaatcctgagggagaagatgcaggtgaatgagatggtcctagagccactggacctgtgaatatacatcaaaatcattataaagattaattcaaacgaaaa |
317 |
Q |
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| T |
46816676 |
aaatcctgagggagaagatgcaggtgaatgagatggtcctagagccactggacctgtgaatatacatcaaaatcattataaagattaattcaaacgaaaa |
46816775 |
T |
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| Q |
318 |
atagtttagaggaattaaacctacaatgttactagatgatagatcatgctagtttcatttcttatttagcatgattcgatttctaagtaagaaatggaat |
417 |
Q |
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| T |
46816776 |
atagtttagaggaattaaacctacaatgttactagatgatagatcatgctagtttcatttcttatttagcatgattcgatttctaagtaagaaatggaat |
46816875 |
T |
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| Q |
418 |
tcacatttgttagaaaatatttttgttaggcattttagaagggtttatgtaagaatttgtgtacaaaaatggttgaaattgaaatttggcattaccagga |
517 |
Q |
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| T |
46816876 |
tcacatttgttagaaaatatttttgttaggcattttagaagggtttatgtaagaatttgtgtacaaaaatgattgaaattgaaatttggcattaccagga |
46816975 |
T |
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| Q |
518 |
gcaggaagtggtgaagctgaggctgcagagtaataaaaagtaacatattagctttattattgag-----aataacaaaatttactctacaaagtt |
607 |
Q |
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| T |
46816976 |
gcaggaagtggtgaagctgaggctgcaaagtaatgaaaagtaacatattagctttattattgagaataaaataacaaaatttactctacaaagtt |
46817070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 46816499 - 46816571
Alignment:
| Q |
12 |
gagatgaagttggtgaagctggtaggtcagaagatgctgctcaaagaaaaatgtacaagagttggatgttagtaa |
86 |
Q |
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| T |
46816499 |
gagatgaagttggtgaagctggtaggtcagaagatgctgctcaaagaaaaatgt--aagagttggatgttagtaa |
46816571 |
T |
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