View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15430_high_3 (Length: 448)
Name: NF15430_high_3
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 89 - 440
Target Start/End: Original strand, 7899156 - 7899494
Alignment:
| Q |
89 |
cttttggttagcacaagaaacacgtttgcctattctattctcatgtctctctcacccttcattatatttatcagtattcacaatacatatcataacataa |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
7899156 |
cttttggttagcacaagaaacacgtttgcctattctattcttctgtctctctcacccttcattatatttat----attcaca-----tatcataacataa |
7899246 |
T |
|
| Q |
189 |
ccaattcaagcaacaaaatcataaaaatacttttcccaatgatggaaattcgtaagcaacaaaaacccatcaaatttagtagtaggttcaaacgtatttg |
288 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7899247 |
ccaattcaagcaacaaaatcataaaaatacttttccctattatggaaattcataagcaacaacaacccatcaaatttagtagtaggttcaaacgtatttg |
7899346 |
T |
|
| Q |
289 |
tgtcttctgtggaaccagctagccctggcaaaaatcccatctatcaacatgctgctattcaactcgctgaacaactggtataatatatagtattctatat |
388 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7899347 |
tgtcttctgtggcacc----agccctggcaaaaatcccatctaccaacatgctgctattcaacttgctgaacaactggtataatatatagtattctatag |
7899442 |
T |
|
| Q |
389 |
actcaatactttcaatttttctcaattattcttcacataaaccaggtttctt |
440 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
7899443 |
actcaatactttccatttttctcaattattcttcatataaaccaggtttctt |
7899494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 333 - 440
Target Start/End: Original strand, 7883816 - 7883923
Alignment:
| Q |
333 |
caacatgctgctattcaactcgctgaacaactggtataatatatagtattctatatactcaatactttcaatttttctcaattattcttcacataaacca |
432 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7883816 |
caacatgctgctattcaactcgctgaacaactggtataatatatagtattctatatactcaatactttcaatttttctcaattattcttcacataaacca |
7883915 |
T |
|
| Q |
433 |
ggtttctt |
440 |
Q |
| |
|
|||||||| |
|
|
| T |
7883916 |
ggtttctt |
7883923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 7898720 - 7898772
Alignment:
| Q |
20 |
aattctcatagattcccttcactcacttttggccatttgttttccaacaaaca |
72 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7898720 |
aattcttatagattcccttcactcacttttggccatttgttttccaacaaaca |
7898772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 224 - 272
Target Start/End: Original strand, 7883740 - 7883787
Alignment:
| Q |
224 |
ccaatgatggaaattcgtaagcaacaaaaacccatcaaatttagtagta |
272 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
7883740 |
ccaatgatggaaattcataagcaac-aaaacccatcaaatttagtagta |
7883787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University