View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_high_4 (Length: 448)
Name: NF15430_high_4
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 7 - 431
Target Start/End: Complemental strand, 51319293 - 51318869
Alignment:
| Q |
7 |
tcgaagaatatgctccttgctacaaagatcttgtaagagtattgtttgagagaatggaagaggaagaagatgaatttctacaatatacaaaaacttcaaa |
106 |
Q |
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| T |
51319293 |
tcgaagaaaatgctccttgctacaaagatcttgtaagagtattgtttgagagaatggaagaggaagaagatgaatttctacaatatacaaaaacttcaaa |
51319194 |
T |
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| Q |
107 |
agcaatgtttgatgcagcacaattaggcaacatcttaattttagaatttattttcaactataatccgaatatatttatggaagtcaattctgaaggacaa |
206 |
Q |
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| T |
51319193 |
agcaatgtttgatgcagcacagttaggcaacatcttaattttagaatttattttcaactataatccgaatatatttatggaagtcaattctgaagggcaa |
51319094 |
T |
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| Q |
207 |
agtttacttcacgttgcgattttacaccgacaagaacttgtgtaccatctaatattgagcaagggttcatacaaaaatgttttggtgcaaattgttgatc |
306 |
Q |
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| T |
51319093 |
agtttacttcacgttgcgattttacaccgacaagaacttgtgtaccatctaatattgagcaagggttcatacaaaaatgttttggtgcaaattgttgatc |
51318994 |
T |
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| Q |
307 |
aggagggaaacaatgttcttcacttggctggaaagtttgtttctaaaggaagatttggatcacctcatataaatcaagatcttctaattcacagtgatga |
406 |
Q |
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| T |
51318993 |
aggagggaaacaatgttcttcacttggctggaaagtttgtttctaaaggaagatttggatcacctcatatacatcaagatcttctaattcacagtgatga |
51318894 |
T |
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| Q |
407 |
gtcatggtttaaggtacatgattac |
431 |
Q |
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| T |
51318893 |
gtcatggtttaaggtacatgattac |
51318869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 95 - 343
Target Start/End: Complemental strand, 51343024 - 51342776
Alignment:
| Q |
95 |
aaaaacttcaaaagcaatgtttgatgcagcacaattaggcaacatcttaattttagaatttattttcaactataatccgaatatatttatggaagtcaat |
194 |
Q |
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|||||||||||||||||||||||| |||||| ||| ||| ||||| |||||||||| ||||| |||||||| ||||||||| |||| |||||||||||| |
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| T |
51343024 |
aaaaacttcaaaagcaatgtttgaggcagcaaaatcaggaaacattataattttagattttatcttcaactacaatccgaatctattcatggaagtcaat |
51342925 |
T |
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| Q |
195 |
tctgaaggacaaagtttacttcacgttgcgattttacaccgacaagaacttgtgtaccatctaatattgagcaagggttcatacaaaaatgttttggtgc |
294 |
Q |
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| T |
51342924 |
tcaaaagggcaaagcatacttcacattgctatcttatataggaaaggaagtgtatatcgtttaatattcacaaagggttcatacaagaatgttttagtgc |
51342825 |
T |
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| Q |
295 |
aaattgttgatcaggagggaaacaatgttcttcacttggctggaaagtt |
343 |
Q |
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| T |
51342824 |
aacatattgatctcgagggaaacaatattcttcacttggctggaaagtt |
51342776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 218
Target Start/End: Complemental strand, 51312826 - 51312728
Alignment:
| Q |
120 |
gcagcacaattaggcaacatcttaattttagaatttattttcaactataatccgaatatatttatggaagtcaattctgaaggacaaagtttacttcac |
218 |
Q |
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| T |
51312826 |
gcagcaaaatcaggaaacatcatggttttaaaatttatttttaactataaccccaatttgtttatggaagtcaatcctcaagggcaaaacttacttcac |
51312728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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