View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_low_10 (Length: 411)
Name: NF15430_low_10
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 40292313 - 40292543
Alignment:
| Q |
1 |
tgaaagtgattattcatgctcgtcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40292313 |
tgaaagtgattattcatgctcgtcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggttt |
40292412 |
T |
|
| Q |
101 |
caaaagcaacttcgccagaaattgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaacca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40292413 |
caaaagcaacttcgccagaaattgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaacca |
40292512 |
T |
|
| Q |
201 |
cagcagcccaaattgcaacatcaataatcaa |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
40292513 |
cagcagcccaaattgcaacatcaataatcaa |
40292543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 230 - 395
Target Start/End: Original strand, 40292764 - 40292929
Alignment:
| Q |
230 |
aagtagtaagaaagacaatgaaagttcatctaaactctccttcatcacaattgaaacttacatcagttatgttactgctaattggaatatatatcaaagg |
329 |
Q |
| |
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|||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40292764 |
aagtagtaagaaagacgatgaaagttcatctgaactctccttcatcacaatagaaacttacatcagttatgttactgctaattggaatatatatcaaagg |
40292863 |
T |
|
| Q |
330 |
ggtcattgtcttatcttatgggcactgtttttgcaataaattaatagtagtatagaaagtttgaat |
395 |
Q |
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| T |
40292864 |
ggtcattgtcttatcttaggggcactgtttttgcaataaattaatagtagtatagaaagtttgaat |
40292929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 12 - 237
Target Start/End: Original strand, 40285051 - 40285276
Alignment:
| Q |
12 |
attcatgctcgtcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaact |
111 |
Q |
| |
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||||||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||||| | |||| |||||| |||||||||||| || |||| |
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| T |
40285051 |
attcatgctagtcagaaattgaagtctacatactctttcttcaactattacacctcttaaaccagttatctcgcacttaattggggtttcagaaacaacg |
40285150 |
T |
|
| Q |
112 |
tcgccagaaattgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaa |
211 |
Q |
| |
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| T |
40285151 |
ttgccagaaattgcaacaagcaatggtaacctttcaacatccagtagttgttctgaaaagtgaagaatcccaaccatgatcagaaaccacagcagcacaa |
40285250 |
T |
|
| Q |
212 |
attgcaacatcaataatcaagtagta |
237 |
Q |
| |
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||||| |||||| |||||||||||| |
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| T |
40285251 |
attgcttcatcaagaatcaagtagta |
40285276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 8 - 202
Target Start/End: Original strand, 40257870 - 40258063
Alignment:
| Q |
8 |
gattattcatgctcgtcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagc |
107 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||||| |||| |||| ||| ||||| |||||||| || | || ||| | ||||| |||||| || | |
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| T |
40257870 |
gattattcatgcttttcagaaat-gaagtatacatactgtttcttcaattataacacctcttaaaccactgaactcgcagctaattggagtttcagaacc |
40257968 |
T |
|
| Q |
108 |
aacttcgccagaaattgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccaca |
202 |
Q |
| |
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||| |||||||||| |||||||| || ||| ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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|
| T |
40257969 |
cactcttccagaaattgcaacaaccaagggaaatatttcttcatccaacagttgtgctgaaaaaacaagaatcccaaggatgatcagaaaccaca |
40258063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 40266330 - 40266541
Alignment:
| Q |
22 |
gtcagaaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaa |
121 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||| ||||| |||||||| | | || |||||| |||||||||||| || |||| ||||||| |
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| T |
40266330 |
gtcagaaattgaagtctacatactgtttcttcaactacaacacctcttaaaccagtcaactcgcacttaattggggtttcagaaacaacacacccagaaa |
40266429 |
T |
|
| Q |
122 |
ttgaaacaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacat |
221 |
Q |
| |
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||| |||||||| || || ||||| |||||| || |||| |||||| ||| |||||| |||| |||| ||||||| |||||| ||||||||| ||| |
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| T |
40266430 |
ttgcaacaaccaagtgtgatctttctccatccagcaattgttctgaaacgtg-agaatctcaagtatgattagaaaccgtagcagcacaaattgcatcat |
40266528 |
T |
|
| Q |
222 |
caataatcaagta |
234 |
Q |
| |
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||||||| |||| |
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| T |
40266529 |
aaataatctagta |
40266541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 180
Target Start/End: Original strand, 40272587 - 40272740
Alignment:
| Q |
27 |
aaattgaagtctacatacactttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaattgaa |
126 |
Q |
| |
|
|||||||||| ||||||| | ||| || |||||| |||| | |||||| || | || || | | ||||||| |||| || ||||| ||||||||||| | |
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| T |
40272587 |
aaattgaagtttacatactcgttcttcgactattgcacctcctaaaccactcaactcgcccgtaattggggcttcacaaacaactctgccagaaattgta |
40272686 |
T |
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| Q |
127 |
acaaccataggtaatttttctgcatccaacagttgtgctgaaaagtgaagaatc |
180 |
Q |
| |
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|||||| | |||||| | | |||||||| ||| || |||||||||||||||||| |
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| T |
40272687 |
acaaccctgggtaatatatttgcatccatcagatgagctgaaaagtgaagaatc |
40272740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 46 - 302
Target Start/End: Complemental strand, 43461498 - 43461246
Alignment:
| Q |
46 |
ctttcgtcaactattacaccacttaaaccgctaatcttgcacttgattggggtttcaaaagcaacttcgccagaaattgaaacaaccataggtaattttt |
145 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||| |
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| T |
43461498 |
ctttcgtcaactattacaccacttaaactactaatctcgcacttgattggggtttcagaagcaacttcgtcagaaattgaaacaaccaagggtaattttt |
43461399 |
T |
|
| Q |
146 |
ctgcatccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatcaataatcaagtagtaagaaagac |
245 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
43461398 |
ccgcatccaacagttgtgctaaaaagtgaaaaatcccaagcgtcgtcagaaaccacagcatcccaaattgcaacatcaataatcaagtagt----aagat |
43461303 |
T |
|
| Q |
246 |
aatgaaagttcatctaaactctccttcatcacaattgaaacttacatcagttatgtt |
302 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
43461302 |
aatgaaagttcatctaagctctacttcatcactgcataaacttacatcagttatgtt |
43461246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 150 - 302
Target Start/End: Complemental strand, 7076519 - 7076371
Alignment:
| Q |
150 |
atccaacagttgtgctgaaaagtgaagaatcccaagcgtgatcagaaaccacagcagcccaaattgcaacatcaataatcaagtagtaagaaagacaatg |
249 |
Q |
| |
|
|||||||| ||||||| ||||||||| ||||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
7076519 |
atccaacaattgtgctaaaaagtgaaaaatccaaagcgtcgtcagaaaccacggcggcccaaattgcaacatcaataatcaagtagt----aagataatg |
7076424 |
T |
|
| Q |
250 |
aaagttcatctaaactctccttcatcacaattgaaacttacatcagttatgtt |
302 |
Q |
| |
|
||| ||||||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
7076423 |
aaacttcatctaagctctacttcatcactgcaaaaacttacatcagttatgtt |
7076371 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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