View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_low_11 (Length: 405)
Name: NF15430_low_11
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 25 - 388
Target Start/End: Complemental strand, 1906064 - 1905690
Alignment:
| Q |
25 |
agagggtagaggatgtctgaatttggttgtgttgttcaggtgtgagaagtccctt--------tccttccccttttcaacttcatgcttctaccnnnnnn |
116 |
Q |
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| T |
1906064 |
agagagtagaggatgtctgaatttggttgtgttgttcaggtgtgagaagtcccttcccatccttccttccccttttcaacttcatgcttctaccaaaata |
1905965 |
T |
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| Q |
117 |
nnnnnnnnnnnnnctttgatgttgaagaaaaatagtt-aattgtattcttgaaattggaatttttctgtttgatcttacaagtatagtcatagtttgaaa |
215 |
Q |
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| T |
1905964 |
aaataaaataaatctttgatgttgaagaaaaatagtttaattgtattcttgaaattggaatttttctgtttgatcttacaagtatagtcatagtttgaaa |
1905865 |
T |
|
| Q |
216 |
cttatgaatatggttactaatttactatattcaattaaagatggtacgatttaaaatcctgaaaattgt--tgagttggtggaatttcgaccacggttaa |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1905864 |
cttatgaatatggttactaatttactatattcaattaaagatggtacgatttaaaatcctgaaaattgttgtgagttggtggaatttcgaccacggttaa |
1905765 |
T |
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| Q |
314 |
acttgcaatggcatgcgtacaaagcctatattcagattgatgctactgtgaaatttcaaccagtccctatatact |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1905764 |
acttgcaatggcatgcgtacaaagcctatattcagattgatgctactgtgaaatttcaaccagtccctatatact |
1905690 |
T |
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