View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_low_16 (Length: 320)
Name: NF15430_low_16
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 2964725 - 2964490
Alignment:
| Q |
20 |
tgttgcacttactttccctaaattttgtttacaactctgcatgttccttttgaaaaaactctgcatgttcttgatgagtgttaaagatgccaataattct |
119 |
Q |
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| T |
2964725 |
tgttgcacttactttccctaaattttgtttacaactctgcatgttccttttgaaaaaactctgcatgttcttgatgagtgttaaagatggcaataattct |
2964626 |
T |
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| Q |
120 |
ttggcgtaatattaagtgaggaactgtattttatgatttactttggtgcctaagagaggaactgtagagcatggataaatttttggatagtatta--cca |
217 |
Q |
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| T |
2964625 |
ttggcgtaatattaagtgaggaactgtattttatgatttactttggtgcctaagagaggaacggtagagtatggataaatttttggatagtattacccca |
2964526 |
T |
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| Q |
218 |
ttt------tcatgctcattctcattaatcatattt |
247 |
Q |
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| T |
2964525 |
ttttcatggtcatgctcattctcattaatcatattt |
2964490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 75 - 306
Target Start/End: Complemental strand, 2945346 - 2945119
Alignment:
| Q |
75 |
aaactctgcatgttcttgatgagtgttaaagatgccaataattctttggcgtaatatta---agtgaggaactgtattttatgatttactttggtgccta |
171 |
Q |
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| T |
2945346 |
aaactctgcatgttcttgatgagtgttaaagaggccaataattctttggcgtaatattattaagtgagtaactatattttatgatttactttggtgccta |
2945247 |
T |
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| Q |
172 |
agagaggaactgtagagcatggataaatttttggatagtattaccattttcatgctcattctcattaatcatattttatgcaagttactattaacattgt |
271 |
Q |
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| T |
2945246 |
agagaggaaccgtagagtatggataaacttttgcatagtattaccattttcatgctcattctcattaataacattttaagcaag-------taacattgt |
2945154 |
T |
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| Q |
272 |
cattttcacgctttagacaagtaaagttgtcactt |
306 |
Q |
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| T |
2945153 |
cattttcactctttagacaagtaaagatgtcactt |
2945119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 2964492 - 2964458
Alignment:
| Q |
275 |
tttcacgctttagacaagtaaagttgtcacttcat |
309 |
Q |
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| T |
2964492 |
tttcacgctttagacaagtaaagttgtcacttcat |
2964458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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