View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15430_low_17 (Length: 282)

Name: NF15430_low_17
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15430_low_17
NF15430_low_17
[»] chr6 (1 HSPs)
chr6 (19-239)||(2481464-2481685)
[»] chr4 (2 HSPs)
chr4 (19-239)||(12632432-12632653)
chr4 (19-239)||(27108139-27108360)
[»] chr1 (2 HSPs)
chr1 (19-239)||(44680752-44680973)
chr1 (24-239)||(23271999-23272215)
[»] chr3 (2 HSPs)
chr3 (100-237)||(4709008-4709145)
chr3 (141-242)||(4708773-4708873)
[»] chr5 (1 HSPs)
chr5 (142-204)||(39789350-39789412)
[»] chr2 (1 HSPs)
chr2 (162-227)||(13510120-13510187)
[»] chr8 (1 HSPs)
chr8 (183-238)||(18616199-18616254)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 2481685 - 2481464
Alignment:
Q  19 gattctctatttctctgctcttttgatggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnn-tcacgcctgctcataaccccattct 117  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||    
T  2481685 gattgtctatttctctgctcttttgatggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattct 2481586  T
Q  118 tgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaac 217  Q
    | |||  |||||||||       |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  2481585 tttttacgaatctaccttttttaattgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaac 2481486  T
Q  218 aaagggaacacaatttgtctca 239  Q
    ||| ||||||||||||||||||    
T  2481485 aaatggaacacaatttgtctca 2481464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 12632432 - 12632653
Alignment:
Q  19 gattctctatttctctgctcttttgatggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnn-tcacgcctgctcataaccccattct 117  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||    
T  12632432 gattgtctatttctctgctcttttgatggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattct 12632531  T
Q  118 tgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaac 217  Q
    | |||  |||||||||       |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  12632532 tttttacgaatctaccttttttaattgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaac 12632631  T
Q  218 aaagggaacacaatttgtctca 239  Q
    ||| ||||||||||||||||||    
T  12632632 aaatggaacacaatttgtctca 12632653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 27108139 - 27108360
Alignment:
Q  19 gattctctatttctctgctcttttgatggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnn-tcacgcctgctcataaccccattct 117  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||    
T  27108139 gattgtctatttctctgctcttttgatggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattct 27108238  T
Q  118 tgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaac 217  Q
    | |||  |||||||||       |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  27108239 tttttacgaatctaccttttttaattgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaac 27108338  T
Q  218 aaagggaacacaatttgtctca 239  Q
    ||| ||||||||||||||||||    
T  27108339 aaatggaacacaatttgtctca 27108360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 44680752 - 44680973
Alignment:
Q  19 gattctctatttctctgctcttttgatggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnn-tcacgcctgctcataaccccattct 117  Q
    |||| |||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||    
T  44680752 gattgtctatttctctgctcttttgatggttccattattttcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattct 44680851  T
Q  118 tgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaac 217  Q
    | |||  |||||||||       |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  44680852 tttttacgaatctaccttttttaattgagaacccttgttgataagcatatctcttataaaagacataggcttcttcttcactaagaaaaatttgaccaac 44680951  T
Q  218 aaagggaacacaatttgtctca 239  Q
    ||| ||||||||||||||||||    
T  44680952 aaatggaacacaatttgtctca 44680973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 24 - 239
Target Start/End: Original strand, 23271999 - 23272215
Alignment:
Q  24 tctatttctctgctcttttgatggttccatgaatttcaaggaggctctaccttcacgatgacnnnnnnn-tcacgcctgctcataaccccattcttgttt 122  Q
    |||||||||||||||||||||||||||||| | | ||||||| ||| |||||||||||||||        ||||| ||||  |||||||||||||| |||    
T  23271999 tctatttctctgctcttttgatggttccattattgtcaaggatgctttaccttcacgatgacaaaaaatatcacgtctgcaaataaccccattctttttt 23272098  T
Q  123 gtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagg 222  Q
      |||||||||       |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |    
T  23272099 acgaatctaccttttttaattgagaacccttgttgataagcatatctcttataaaagacataagcttcttcttcactaagaaaaatttgacaaacaaatg 23272198  T
Q  223 gaacacaatttgtctca 239  Q
    |||||||||||||||||    
T  23272199 gaacacaatttgtctca 23272215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 100 - 237
Target Start/End: Original strand, 4709008 - 4709145
Alignment:
Q  100 tgctcataaccccattcttgtttgtgaatctaccnnnnnnnattgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcact 199  Q
    |||| |||||||||||||| |||  |||||||||       ||||| ||  |||| ||||||||||||||||||||||||||| || |||||||||||||    
T  4709008 tgctaataaccccattcttttttacgaatctacctttttttattgacaattcttgctgataagcatatctcttataaaagacatatccttcttcttcact 4709107  T
Q  200 aagaaaaatttgaccaacaaagggaacacaatttgtct 237  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  4709108 aagaaaaatttgaccaacaaaggaaacaaaatttgtct 4709145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 242
Target Start/End: Complemental strand, 4708873 - 4708773
Alignment:
Q  141 attgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctcat 240  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||||||||    
T  4708873 attgagaacccttgttgataagcatatctcttataaaa-agacatgcttctttttcactaaaaaaaattcgaccaacaaagagaacataatttgtctcat 4708775  T
Q  241 ta 242  Q
    ||    
T  4708774 ta 4708773  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 39789350 - 39789412
Alignment:
Q  142 ttgagaacccttgttgataagcatatctcttataaaagacaaatgcttcttcttcactaagaa 204  Q
    |||||||||| |||||||| |||||| |||||||||||| |||| ||||||||||||||||||    
T  39789350 ttgagaacccgtgttgatatgcatatatcttataaaagataaattcttcttcttcactaagaa 39789412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Complemental strand, 13510187 - 13510120
Alignment:
Q  162 gcatatctcttataaaagacaaatgcttcttcttcactaagaaaa--atttgaccaacaaagggaaca 227  Q
    |||||||||||||| |||||||||| |||||| |  |||||||||  |||||||||||||| ||||||    
T  13510187 gcatatctcttatagaagacaaatgtttcttccttgctaagaaaaatatttgaccaacaaaaggaaca 13510120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 18616199 - 18616254
Alignment:
Q  183 aatgcttcttcttcactaagaaaaatttgaccaacaaagggaacacaatttgtctc 238  Q
    |||||||||| |||| ||||||||||||||||| ||||   |||||||||||||||    
T  18616199 aatgcttctttttcattaagaaaaatttgaccagcaaaaaaaacacaatttgtctc 18616254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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