View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_low_3 (Length: 489)
Name: NF15430_low_3
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 16 - 459
Target Start/End: Complemental strand, 50263902 - 50263459
Alignment:
| Q |
16 |
cttattttggtacaaccattttttggtggaaaagaaagaacattatcagagaaatgcatggaacaattatctggttctgctttgaatttagcagcttcag |
115 |
Q |
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| T |
50263902 |
cttattttggtacaaccattttttggtggaaaagaaagaacattatcagagaaatgcatggaacaattatctggttctgctttgaatttagcagcttcag |
50263803 |
T |
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| Q |
116 |
atacttattggcgattggcattaccatatggcgaagatcgcgatcatccatggtgtaatccattggtgaaaatggaggaattgaagctactgatgatgcc |
215 |
Q |
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| T |
50263802 |
atacttattggcgattggcattaccatatggcgaagatcgcgatcatccatggtgtaatccattggtgaaaatggaggaattgaagctactgatgatgcc |
50263703 |
T |
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| Q |
216 |
tatgttggtgtgtatatctgagatggatatattgaaggataggaacatggagttttgtgatgctttgggaagaacaggtacaagggttgaatgtgaagtg |
315 |
Q |
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| T |
50263702 |
tatgttggtgtgtatatctgagatggatatattgaaggataggaacatggagttttgtgatgctttgggaagaacaggtacaagggttgaatgtgaagtt |
50263603 |
T |
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| Q |
316 |
tttaaaggtgttggccatgctttccagattctaagtaaatctcaggtctctaagataagagttgttcaaatgatggattgtgtcaaatcattcatgggtt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50263602 |
tttaaaggtgttggccatgctttccagattctaagtaaatctcaggtctctaagataagagttgttcaaatgatggattgtgtcaaatcattcatgggtt |
50263503 |
T |
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| Q |
416 |
ttgattctcagtttttatttgatcttgattaatgtttaaatatc |
459 |
Q |
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| T |
50263502 |
ttgattctcagtttttatttgatcttgattaatgtttaaatatc |
50263459 |
T |
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