View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15430_low_5 (Length: 481)
Name: NF15430_low_5
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 302
Target Start/End: Complemental strand, 4637716 - 4637434
Alignment:
| Q |
20 |
aaacaaatataacatacatattacatagagacttaattgaaactgagagttgttatttcaatatatttatgaacttttccatatgagggggattactcaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4637716 |
aaacaaatataacatacatattacatagagacttaattgaaactgagagttgttatttcaatatatttatgaacttttccatatgagggggattactcaa |
4637617 |
T |
|
| Q |
120 |
tataccgtcagtatcagagaagattagaaaacacatctgaagcagatatactttactgtagttcactatcagtttgagttgagtctttttctgaccgtgc |
219 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4637616 |
tataccgtcagtaccagagaagattagaaaacacatctgaagcagatatactttactgtagttcactatcagtttgagttgagtctttttctgaccgtgc |
4637517 |
T |
|
| Q |
220 |
cnnnnnnnccactgtcaccatcactatgttcagtcacacatgacccacaaacacaatgataaacatgaggaaatcttagttgg |
302 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4637516 |
ctttttttccactgtcaccatcactatgttcagtcacacatgacccacaaacacaatgataaacatgaggaaatcttagttgg |
4637434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 372 - 468
Target Start/End: Complemental strand, 4637364 - 4637268
Alignment:
| Q |
372 |
tgtaactaaataaaaattgttcaaatatcttattcattttttatagaagataaatctagacaagtgaagcatccctcatgcaaagttagagagaaat |
468 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4637364 |
tgtaactaaataaaaattgttcaaatatcttattcattttttatagaagataaatctagacaagtgaagcacccctcatgcaaagatagagagaaat |
4637268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University