View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_low_6 (Length: 460)
Name: NF15430_low_6
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 10724485 - 10724719
Alignment:
| Q |
1 |
gtattcaggcttcagctcataggtgccttgattagttcctttgttattgtagacacaaagatctttcagtatatctttcagaaattgctgcacagaaaag |
100 |
Q |
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| T |
10724485 |
gtattcaggcttcagctcataggtgccttgattagttcctttgttattgtagacacaaagatctttcagtatatctttcagaaattgctgcacagaaaag |
10724584 |
T |
|
| Q |
101 |
tataatccgttagatgtaacacattactagttaaacacaggcacaactggatatatacaaacaaatattcaataaccaagtatgtcatacagtaaggtat |
200 |
Q |
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| T |
10724585 |
tataatccgttagatgtaacacattactagttaaacacaggcacaactggatatatacaaacaaatattcaataaccaagtatgtcatacagtaaggtat |
10724684 |
T |
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| Q |
201 |
atacatatatgtataaactataatagccatcatca |
235 |
Q |
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| T |
10724685 |
atacatatatgtataaactataatagccatcatca |
10724719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 233 - 446
Target Start/End: Original strand, 10724770 - 10724981
Alignment:
| Q |
233 |
tcaattgcataaatataatcaaatgggtctatgagcattaaccatagattcatgttttacatatacttgaagcaattggagtctatgaaacactgacaca |
332 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
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| T |
10724770 |
tcaattgcataaatataatcaaatgggtctacgagcattaaccatagattcatgttt-acgtatacttgaagcaattggagtctatgaaacaccgagaca |
10724868 |
T |
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| Q |
333 |
aacatagatactcatatgttggcaccaacagtaatttgagaaaatgaaagtgatttatgtaacaacgatannnnnnnactgtcatgtcggcgacagacac |
432 |
Q |
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| T |
10724869 |
aacatagatactgatatgttgacaccaatagtaatttgagaaaatgaaagtgatttatgtaacaacgata-ttttttagtgtcatgtcggcgacggacac |
10724967 |
T |
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| Q |
433 |
caaacacacctttg |
446 |
Q |
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| T |
10724968 |
tgaacacacctttg |
10724981 |
T |
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