View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15430_low_7 (Length: 460)
Name: NF15430_low_7
Description: NF15430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15430_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 443
Target Start/End: Original strand, 12596696 - 12597135
Alignment:
| Q |
1 |
ttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttcttttattatcttacatgatcattaaagatacagcagctgtgttt |
100 |
Q |
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| T |
12596696 |
ttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttcttttattatcttacatgatcattaaagatacagcagctgtgttt |
12596795 |
T |
|
| Q |
101 |
gttcttaaaatattttttacttttcccatcaattggctgaaaacaactatgtttggtttcattatgtcacaagtgcttgtctttgaacatggactttttg |
200 |
Q |
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| T |
12596796 |
gttcttaaaatatttttaacttttcccatcaattggctgaaaacaactatgtttggtttcattatgtcacaagtgcttgtctttgaacatggactttttg |
12596895 |
T |
|
| Q |
201 |
tgtttggtttcaatatctcacaagtgtttctctttgtacaaagaatttttatgttgtccattttaaaaatctaatctaaatttccattcatgtggcttca |
300 |
Q |
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| T |
12596896 |
tgtttggtttcaatatctcacaagtgtttctctttgtacaaagaatttttatgttgtccattttaaaaatctaatctaaatttccattcatgtggcttca |
12596995 |
T |
|
| Q |
301 |
tgtaacaactcaagtctttggtgaagttagttcatgatatagaagaagaagaaagaggaacataatgataaaattcactatccagatttacaaggaagac |
400 |
Q |
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| T |
12596996 |
tgtaacaactcaagtctttggtgaagttagttcatgatat---agaagaagaaagaggaacataataataaaattcactatccagatttacaagcaagac |
12597092 |
T |
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| Q |
401 |
acagtgatgaagattggcaaggtttaatattaaattttggagt |
443 |
Q |
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| T |
12597093 |
acagtgatgaagattggcaaggtttaatatcaaattttggagt |
12597135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 3313807 - 3313866
Alignment:
| Q |
1 |
ttgatgtattgaccgaccataccgtaagaatttctctacatcgtgttttgaatttctttt |
60 |
Q |
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|||||||| ||||||||||||| |||||||||| ||||||| | |||||||||| |||| |
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|
| T |
3313807 |
ttgatgtactgaccgaccatactgtaagaatttatctacattgcattttgaatttatttt |
3313866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 3392692 - 3392654
Alignment:
| Q |
15 |
gaccataccgtaagaatttctctacatcgtgttttgaat |
53 |
Q |
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| T |
3392692 |
gaccataccgtaagaatttctctacattgtattttgaat |
3392654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 3313976 - 3314051
Alignment:
| Q |
255 |
tgtccattttaaaaatctaatctaaatttccattcatgtggcttcatgtaacaactcaagtctttggtgaagttagt |
331 |
Q |
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||||||| |||||||| |||| |||| || ||| |||| | |||||||||||||||||| | ||||| ||||||||| |
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| T |
3313976 |
tgtccatgttaaaaatataatataaagtttcatacatgggtcttcatgtaacaactcaa-tttttggagaagttagt |
3314051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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