View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_high_20 (Length: 381)

Name: NF15431_high_20
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_high_20
NF15431_high_20
[»] chr2 (3 HSPs)
chr2 (11-278)||(31171362-31171629)
chr2 (209-284)||(15828409-15828484)
chr2 (334-365)||(31171675-31171706)
[»] chr4 (2 HSPs)
chr4 (220-290)||(13212835-13212905)
chr4 (68-103)||(43570159-43570194)
[»] chr7 (2 HSPs)
chr7 (211-290)||(37382819-37382898)
chr7 (161-210)||(14592252-14592301)
[»] chr8 (1 HSPs)
chr8 (161-210)||(20535061-20535110)
[»] chr1 (2 HSPs)
chr1 (161-210)||(8728064-8728113)
chr1 (161-210)||(43802216-43802265)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 278
Target Start/End: Original strand, 31171362 - 31171629
Alignment:
Q  11 cagagataatcacagccccctgaaatcaacactgcaaaaaacacctctaaatcaccgtcacaaggcaatccttttgattccaacaccattcatagtatgt 110  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171362 cagagataaccacagccccctgaaatcaacactgcaaaaaacacctctaaatcaccgtcacaaggcaatccttttgattccaacaccattcatagtatgt 31171461  T
Q  111 atgaacatgcgagaatatggatgcaattcaatgtccaatgtcaagacaacactgaatatcgaataaacccaatatctcatattgacatagttcaacatgg 210  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  31171462 atgaacatgcgagaatatggatgcaattcaatgtccaacgacaagacaacactgaatatcgaataaacccaatatctcatattgacataattcaacatgg 31171561  T
Q  211 tgatcgttgtcgttcgcggtcaaaataatttacaaaaagtagtacaaggtagttaagctttggtcgtt 278  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31171562 tgatggttgtcgttcgcggtcaaaataatttacaaaaagtagtacaaggtagttaagctttggtcgtt 31171629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 284
Target Start/End: Original strand, 15828409 - 15828484
Alignment:
Q  209 ggtgatcgttgtcgttcgcggtcaaaataatttacaaaaagtagtacaaggtagttaagctttggtcgtttctcaa 284  Q
    |||||||  ||||| ||||||||||||||||||||  |||||||||||||| |||||| | |||||||||||||||    
T  15828409 ggtgatccctgtcgatcgcggtcaaaataatttactgaaagtagtacaaggcagttaaaccttggtcgtttctcaa 15828484  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 334 - 365
Target Start/End: Original strand, 31171675 - 31171706
Alignment:
Q  334 tgggggtttatttttctgaaaaacgatgatca 365  Q
    ||||||||||||||||||||||||||||||||    
T  31171675 tgggggtttatttttctgaaaaacgatgatca 31171706  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 13212835 - 13212905
Alignment:
Q  220 tcgttcgcggtcaaaataatttacaaaaagtagtacaaggtagttaagctttggtcgtttctcaagaatct 290  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| | |||||||||||||||| ||||    
T  13212835 tcgttcgcggtcaaaataatttacaaaaagtagtacaaggcacttaaaccttggtcgtttctcaaggatct 13212905  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 103
Target Start/End: Complemental strand, 43570194 - 43570159
Alignment:
Q  68 tcacaaggcaatccttttgattccaacaccattcat 103  Q
    ||||||||||||||||| ||||||||||||||||||    
T  43570194 tcacaaggcaatcctttggattccaacaccattcat 43570159  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 211 - 290
Target Start/End: Original strand, 37382819 - 37382898
Alignment:
Q  211 tgatcgttgtcgttcgcggtcaaaataatttacaaaaagtagtacaaggtagttaagctttggtcgtttctcaagaatct 290  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||  || |||| || ||||||||||||||||||||    
T  37382819 tgatcgttatccttcgcggtcaaaataatttacaaaaaatagtacaaactatttaaactatggtcgtttctcaagaatct 37382898  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 14592301 - 14592252
Alignment:
Q  161 actgaatatcgaataaacccaatatctcatattgacatagttcaacatgg 210  Q
    |||||||| |||||||  |||||||||||||||||| ||||||| |||||    
T  14592301 actgaataacgaataagtccaatatctcatattgacttagttcagcatgg 14592252  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 20535061 - 20535110
Alignment:
Q  161 actgaatatcgaataaacccaatatctcatattgacatagttcaacatgg 210  Q
    |||||||| ||||||| ||||||||||||||||||| || |||| |||||    
T  20535061 actgaataacgaataagcccaatatctcatattgacttaattcagcatgg 20535110  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 8728113 - 8728064
Alignment:
Q  161 actgaatatcgaataaacccaatatctcatattgacatagttcaacatgg 210  Q
    |||||||| |||||||  |||||||||||||||||| |||||| ||||||    
T  8728113 actgaataacgaataagtccaatatctcatattgacttagttcgacatgg 8728064  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 43802216 - 43802265
Alignment:
Q  161 actgaatatcgaataaacccaatatctcatattgacatagttcaacatgg 210  Q
    |||||||| |||||||  |||||||||||||||||| |||||| ||||||    
T  43802216 actgaataacgaataagtccaatatctcatattgacttagttcgacatgg 43802265  T

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