View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15431_high_23 (Length: 355)
Name: NF15431_high_23
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_high_23 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 21240345 - 21240010
Alignment:
| Q |
1 |
gcaaaatgcaaacccacatgaatcacatacctattacaacattccattccatgtaactatgacaattatcattacatataatgtttgataattgcttatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
21240345 |
gcaaaatgcaaacccacatgaatcacatacctattacaacattccattccatgtaactatgacatttatcattacatataatgtttgataattgctcatg |
21240246 |
T |
|
| Q |
101 |
aaaatcctcttgcctattgactatatatgggtctttgttgcatctgtccaaaaccatttttatgattgaagattacacaaagtatagattggatattagt |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21240245 |
aaaatcctcttgcctattaactatatatgggtctttgttgcatctgtccaaaaccatttttatgattgaagattacacaaagtatagattggatattagt |
21240146 |
T |
|
| Q |
201 |
aatttagtatcaaatttcagattgtagatgcgtatgcttacaataataattacttcaatgttgaaaactaaaaacacaacattgagttgtgcaggagaga |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21240145 |
aatttagtatcaaatttcagattgtagatgcgtatgcttacaataataacgacttcaatattgaaaactaaaaacacaactttgagttgtgcaggagaga |
21240046 |
T |
|
| Q |
301 |
gcaggggacgattttgtaccatctataacaagctat |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21240045 |
gcaggggacgattttgtaccatctataacaagctat |
21240010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University