View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_high_30 (Length: 304)

Name: NF15431_high_30

Description: NF15431

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15431_high_30

[»] chr1 (1 HSPs)

[»] chr3 (1 HSPs)

Target: chr1 (Bit Score: 136; Significance: 6e-71; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 136; E-Value: 6e-71

Query Start/End: Original strand, 14 - 177

Target Start/End: Complemental strand, 6266239 - 6266076

Alignment:

Q	14	atcaaattgatcacaagttgacacttttttcattcataagttgagatcaacattaattgagcgagttagaaaacaagctaacgatacataaattttagaa	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	6266239	atcaaattgatcacaagttgagacttttttcattcataagttgagatcaacattaattaagtgagttagaaaacacgctaacgatacataaattttagaa	6266140	T

Q	114	attaatgagagaacaataaaccaaattcttcattataacaatcaaactaagttgttctagatat	177	Q
		\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	6266139	atcaatgagagaacaataaaccaaattcttcatcataacaatcaaactaagttcttctagatat	6266076	T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 212 - 244

Target Start/End: Original strand, 2600863 - 2600895

Alignment:

Q	212	caagatcttaagtctttaatctcatccatctac	244	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2600863	caagatcctaagtctttaatctcatccatctac	2600895	T

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