View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_high_32 (Length: 278)

Name: NF15431_high_32
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_high_32
NF15431_high_32
[»] chr7 (5 HSPs)
chr7 (15-88)||(22291168-22291241)
chr7 (15-85)||(46014573-46014643)
chr7 (39-89)||(45215789-45215839)
chr7 (39-88)||(44572277-44572326)
chr7 (42-89)||(10678671-10678718)
[»] chr3 (5 HSPs)
chr3 (15-88)||(43921666-43921739)
chr3 (15-75)||(11411053-11411112)
chr3 (39-88)||(25092126-25092175)
chr3 (26-88)||(27109078-27109140)
chr3 (15-87)||(27044355-27044427)
[»] chr4 (4 HSPs)
chr4 (15-87)||(55681040-55681112)
chr4 (15-88)||(658195-658268)
chr4 (15-88)||(9120906-9120979)
chr4 (39-79)||(54305986-54306026)
[»] chr6 (7 HSPs)
chr6 (19-87)||(34010938-34011006)
chr6 (19-86)||(34013844-34013911)
chr6 (15-89)||(14494167-14494241)
chr6 (15-75)||(17540373-17540433)
chr6 (23-85)||(57372-57434)
chr6 (39-88)||(12844270-12844319)
chr6 (39-88)||(19294695-19294744)
[»] chr2 (7 HSPs)
chr2 (15-88)||(41849347-41849420)
chr2 (15-87)||(17651609-17651681)
chr2 (33-89)||(32200609-32200665)
chr2 (39-88)||(26576429-26576478)
chr2 (15-74)||(34409326-34409385)
chr2 (40-89)||(4747816-4747865)
chr2 (39-88)||(13039244-13039293)
[»] chr8 (4 HSPs)
chr8 (33-89)||(15131733-15131789)
chr8 (28-89)||(18602813-18602874)
chr8 (18-80)||(27402653-27402715)
chr8 (40-89)||(3160155-3160204)
[»] chr1 (2 HSPs)
chr1 (39-89)||(48632322-48632372)
chr1 (39-73)||(23432247-23432281)
[»] chr5 (1 HSPs)
chr5 (39-88)||(40838277-40838326)


Alignment Details
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 22291168 - 22291241
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||| |||||||||||||||||||||||||||||||| | |||||||||||||| |||||| |||||||    
T  22291168 cataggagtgtcggacaccgacgcgtgtcggacactgcgacatgcctagtcctagaggtttccgtgcttcatag 22291241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 46014573 - 46014643
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttca 85  Q
    ||||||||| ||||||||| ||| |||| ||||||||||||||| |||||||| ||||||| |||| ||||    
T  46014573 cataggagtttcggacaccaacgggtgttggacactgcgacacgcctagtcctggaggtgttcgtgcttca 46014643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 45215839 - 45215789
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    ||||||||||| |||||||| |||||||| |||||||||||| ||||||||    
T  45215839 gtgtcggacaccgcgacacgcctagtcctggaggtgtccgtgcttcatagg 45215789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 44572326 - 44572277
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||||| |||||||| |||||| |||||||||||||| |||||||    
T  44572326 gtgtcggacaccgcgacacgcctagtcgtagaggtgtccgtgcttcatag 44572277  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 89
Target Start/End: Original strand, 10678671 - 10678718
Alignment:
Q  42 tcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    |||||||| ||||||||| ||||||||||||||| |||| ||||||||    
T  10678671 tcggacaccgcgacacggttagtcctagaggtgttcgtgcttcatagg 10678718  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 43921739 - 43921666
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||| ||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |||||||    
T  43921739 cataggagtgtcggacaccgaagcgtgtcggacaccgtgacacggctagtcctagaggtgtccgtgcttcatag 43921666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 11411053 - 11411112
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgt 75  Q
    ||||||||| |||||||| |||||||||||||| | ||||||||||||||| |||||||||    
T  11411053 cataggagtgtcggacac-gacgcgtgtcggactccgcgacacggctagtcttagaggtgt 11411112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 25092175 - 25092126
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||| |||||||||||||  ||||||||||||||||||||| |||||||    
T  25092175 gtgtcagacactgcgacacacctagtcctagaggtgtccgtgcttcatag 25092126  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 27109140 - 27109078
Alignment:
Q  26 cggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||||||| |||||||||| |||| || ||||| | ||||||||| |||| |||||||    
T  27109140 cggacaccgacgcatgtcggacaccgcgatactgctagccttagaggtgttcgtgcttcatag 27109078  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 27044355 - 27044427
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcata 87  Q
    ||||||| | ||| ||||||||||||||| |||||||| ||||| |||||   ||||||||| ||| ||||||    
T  27044355 cataggactgtcgaacaccgacgcgtgtctgacactgcaacacgtctagtttaagaggtgtctgtgcttcata 27044427  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 55681040 - 55681112
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcata 87  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||    
T  55681040 cataggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtcctcgaggtgtccgtgcttcata 55681112  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 658268 - 658195
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||| ||| |||||||||||| |||||||||||||||||||||  | |||||| ||||||||||| |||||||    
T  658268 catagaagtgtcggacaccgacacgtgtcggacactgcgacacgcttggtcctataggtgtccgtgcttcatag 658195  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 9120979 - 9120906
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||| | |||||| ||||| | | |||||| || ||||  ||||||||||||||||||||| |||||||    
T  9120979 cataggagtgtaggacactgacgcatattggacacagcaacacacctagtcctagaggtgtccgtgcttcatag 9120906  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 54305986 - 54306026
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgt 79  Q
    ||||||||||| | |||||| ||||||||||||||||||||    
T  54305986 gtgtcggacaccgtgacacgcctagtcctagaggtgtccgt 54306026  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 34011006 - 34010938
Alignment:
Q  19 ggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcata 87  Q
    ||||| ||||||||||||||||||||||||| |||||||| |||||||| |||||||||||| ||||||    
T  34011006 ggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcata 34010938  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 34013844 - 34013911
Alignment:
Q  19 ggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcat 86  Q
    ||||| |||||||||||||| |||||||||| |||||||| |||||||| |||||||||||| |||||    
T  34013844 ggagtgtcggacaccgacgcttgtcggacaccgcgacacgcctagtccttgaggtgtccgtgcttcat 34013911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 14494241 - 14494167
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    ||||||||| ||||||  |||||||||||||| || | |||||| ||||||||||||||||||||| ||||||||    
T  14494241 cataggagtgtcggacctcgacgcgtgtcggataccgtgacacgtctagtcctagaggtgtccgtgcttcatagg 14494167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 17540373 - 17540433
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgt 75  Q
    ||||||||| ||||||||||| |||| ||||||||||||||||| ||| ||||||||||||    
T  17540373 cataggagtgtcggacaccgatgcgtatcggacactgcgacacgtctaatcctagaggtgt 17540433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 85
Target Start/End: Original strand, 57372 - 57434
Alignment:
Q  23 tatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttca 85  Q
    ||||||||||||||| ||||||||||| | ||||  |||||||| ||||| ||||||| ||||    
T  57372 tatcggacaccgacgtgtgtcggacaccgtgacatagctagtccaagaggggtccgtgcttca 57434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 12844270 - 12844319
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||||| |||||| | ||||| ||||||||||||||| |||||||    
T  12844270 gtgtcggacaccgcgacatgcctagttctagaggtgtccgtgcttcatag 12844319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 19294695 - 19294744
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||||| |||||||| ||| ||||||||||||| ||| |||||||    
T  19294695 gtgtcggacaccgcgacacgcctaatcctagaggtgtcggtgcttcatag 19294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 41849347 - 41849420
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||| ||| | ||||||||||||||| |||||||    
T  41849347 cataggagtgtcggacaccgacgcgtgtctgacaccgcgacacgcctaattctagaggtgtccgtgcttcatag 41849420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 87
Target Start/End: Original strand, 17651609 - 17651681
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcata 87  Q
    |||| |||| |||||||| |||||||||||||||| |||||||| ||| ||||| ||||||||||| ||||||    
T  17651609 cataagagtgtcggacactgacgcgtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgcttcata 17651681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 32200665 - 32200609
Alignment:
Q  33 cgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  32200665 cgacacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 32200609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 26576429 - 26576478
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||||||    
T  26576429 gtgtcggacaccgcgacacgtctagtcctagaggtgtccgtgcttcatag 26576478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 34409385 - 34409326
Alignment:
Q  15 cataggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtg 74  Q
    ||||||||| ||||||| | ||||||||| ||||| |||||||| |||||||||||||||    
T  34409385 cataggagtgtcggacatcaacgcgtgtccgacaccgcgacacgcctagtcctagaggtg 34409326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 4747865 - 4747816
Alignment:
Q  40 tgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    ||||||||||  ||||||| ||||||||||||||||||||| ||||||||    
T  4747865 tgtcggacaccacgacacgcctagtcctagaggtgtccgtgcttcatagg 4747816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 13039244 - 13039293
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    |||| |||||| |||||||| ||||||||| ||||||||||| |||||||    
T  13039244 gtgttggacaccgcgacacgcctagtcctataggtgtccgtgcttcatag 13039293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 89
Target Start/End: Complemental strand, 15131789 - 15131733
Alignment:
Q  33 cgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    |||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  15131789 cgacacgtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 15131733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 18602874 - 18602813
Alignment:
Q  28 gacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    |||||| | ||||||||||||| | ||||| ||||||||||||| |||||||| ||||||||    
T  18602874 gacaccaaagcgtgtcggacaccgtgacacagctagtcctagagatgtccgtgcttcatagg 18602813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 27402653 - 27402715
Alignment:
Q  18 aggagtatcggacaccgacgcgtgtcggacactgcgacacggctagtcctagaggtgtccgtg 80  Q
    |||||| |||||||||||| |||||| |||||  | ||||| ||| |||||||||||||||||    
T  27402653 aggagtgtcggacaccgacacgtgtcagacaccacaacacgcctaatcctagaggtgtccgtg 27402715  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 3160155 - 3160204
Alignment:
Q  40 tgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    ||||||||||||||||| |  || ||||||||||||||||| ||||||||    
T  3160155 tgtcggacactgcgacatgcgtaatcctagaggtgtccgtgcttcatagg 3160204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 48632372 - 48632322
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatagg 89  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  48632372 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 48632322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 23432247 - 23432281
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggt 73  Q
    ||||||||||| |||||||||||||||||||||||    
T  23432247 gtgtcggacaccgcgacacggctagtcctagaggt 23432281  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 40838277 - 40838326
Alignment:
Q  39 gtgtcggacactgcgacacggctagtcctagaggtgtccgtgtttcatag 88  Q
    ||||||||||| ||||||||||| | |||||| ||||||||| |||||||    
T  40838277 gtgtcggacaccgcgacacggcttgacctagaagtgtccgtgcttcatag 40838326  T

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