View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_1 (Length: 719)
Name: NF15431_low_1
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 572
Target Start/End: Original strand, 51010444 - 51011001
Alignment:
| Q |
18 |
cacagaagaggaacatgataacaaaagcttgatgacagaaaataatcaatatatgtttgtggatcctttagacacaaaaaagaagcaagaaaatgttgtt |
117 |
Q |
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| T |
51010444 |
cacagaagaggaacatgatagcaaaagcttgatgacagaaaataatcaatatgtgtttgtggatcctttagacacaaaaaagaagcaagaaaatgttgtt |
51010543 |
T |
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| Q |
118 |
ggcagatcagattcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaagtggaaaaggaaaccaatcaaagaacc |
217 |
Q |
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| T |
51010544 |
ggcagatcagattcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaagtggaaaaggaaaccaatcaaagaacc |
51010643 |
T |
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| Q |
218 |
ttgttgctgagagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatctcaaagcttgatagagcttctattct |
317 |
Q |
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| T |
51010644 |
ttgttgctgagagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatctcaaagcttgatagagcttctattct |
51010743 |
T |
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| Q |
318 |
tggtgatgctattgaatttgtgaaggatttgcagaaacaagtgaaggaacttcaagatgaacttgaggaaaattcagaaacaggaactgaaagtaactgc |
417 |
Q |
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| T |
51010744 |
tggtgatgctattgaatttgtgaaggatttgcagaagcaagtgaaggaacttcaagatgaacttgaggaaaattcagaaacaggaactgaaagtaactgc |
51010843 |
T |
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| Q |
418 |
gtatatgttgatggtgttcaagttaaaccaaataataataacaatgttacaaaagcagaacatggttttcatgttgggaatggctatgtttcaaaacaaa |
517 |
Q |
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| T |
51010844 |
gtatatgttgatggtgttcaagttaaagcaaataataataacaatgttacaaaagcagaacatggttttcatgttgggaatggctatgtatcaaaacaaa |
51010943 |
T |
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| Q |
518 |
agcaagaagatgttggta---atgttactgacaagcagacacagcagatggaggtaac |
572 |
Q |
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| T |
51010944 |
agcaggaagatgttggtactgttgttactgacaagcagacacagcagatggaggtaac |
51011001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 603 - 719
Target Start/End: Original strand, 51011043 - 51011155
Alignment:
| Q |
603 |
taaaaagtgtagtaacagatgaatgaatattgcaggcacaagtggaagtggctcagatagatgggaatgagtactttgtgaaggtgttttgtgagcatag |
702 |
Q |
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| T |
51011043 |
taaaaagtgtagtaaca----catgaatattgcaggcacaagtggaagtggctcagatagatggtaatgagtactttgtgaaggtgttttgtgagcatag |
51011138 |
T |
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| Q |
703 |
gcctggtggttttgtga |
719 |
Q |
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| T |
51011139 |
gcctggtggttttgtga |
51011155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 482 - 531
Target Start/End: Original strand, 51014077 - 51014126
Alignment:
| Q |
482 |
gttttcatgttgggaatggctatgtttcaaaacaaaagcaagaagatgtt |
531 |
Q |
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| T |
51014077 |
gttttcatgttccgaatggctatgtttcaaaacaaaaacaggaaggtgtt |
51014126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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