View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_10 (Length: 458)
Name: NF15431_low_10
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Original strand, 45217793 - 45218226
Alignment:
| Q |
10 |
gcaaaggtagagaagccatacttgagtacctgtgttcaaaatctagcgaaaccgcagatttgtttcctctttttgccatagttctttctcttttgtgtgc |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217793 |
gcaaaggtagagaagccatacttgagtacctgtgttcaaaatctagcgaaaccgcagatttgtttcctctttttgccatagttctttctcttttgtgtgc |
45217892 |
T |
|
| Q |
110 |
attttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaacccttggctctaattcattaccatgatttgattcc |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45217893 |
attttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaatccttggctctaattcattaccatgatttgattcc |
45217992 |
T |
|
| Q |
210 |
gatgatgagttcatcgacatggacggttctgtatcgaaacagtttatgagattgagttcttgttttgactcatcatcacaagaatctttactaggaagag |
309 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45217993 |
gatgatgaattcatcgacatggacggttctgtatcgaaacagtttatgagattgagttcttgttttgactcatcatcacaagaatctttactaggaagag |
45218092 |
T |
|
| Q |
310 |
ttaaatccagtagaagatgttttttctcttcattttctgtttgtctcttctcagaaaatgagatgttcaaattattagataaacatggctctaatcttag |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45218093 |
ttaaatccagtagaagatgttttttctcttcattttctgtttgtctcttctcagaaaatgagatgttcaaattattagataaacatggctctaatcttag |
45218192 |
T |
|
| Q |
410 |
aaggtccatatggtaggaaaatatgcaatgattt |
443 |
Q |
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| T |
45218193 |
aaggtccatatggtaggaaaatatgcaatgattt |
45218226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 687073 - 687173
Alignment:
| Q |
75 |
cctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaa |
174 |
Q |
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| T |
687073 |
cctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatgaaaaaa |
687172 |
T |
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| Q |
175 |
c |
175 |
Q |
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| T |
687173 |
c |
687173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 704440 - 704540
Alignment:
| Q |
75 |
cctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaa |
174 |
Q |
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| T |
704440 |
cctcttctcgccaaagttctttcgcgcttgtgtgcattttggtgtcctccaagtgcttgagaactataaaactttctttggcagtagttgcatgaaaaaa |
704539 |
T |
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| Q |
175 |
c |
175 |
Q |
| |
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| |
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|
| T |
704540 |
c |
704540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 53465371 - 53465301
Alignment:
| Q |
102 |
ttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaa |
172 |
Q |
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| T |
53465371 |
ttgtgagcattttggtgtcctcccaaagcttgagagctataaaactttctttgacaatagttgcatgagaa |
53465301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 33032544 - 33032649
Alignment:
| Q |
76 |
ctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagttgcatgagaaaac |
175 |
Q |
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| T |
33032544 |
ctctttttgctaatgttctttctcttttatgtgcattttggtgtccaccaagagcttgagaactgaaaaactttctctgacagtaattgcatgagaaaac |
33032643 |
T |
|
| Q |
176 |
ccttgg |
181 |
Q |
| |
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||||| |
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| T |
33032644 |
tcttgg |
33032649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 163
Target Start/End: Original strand, 2867117 - 2867206
Alignment:
| Q |
74 |
tcctctttttgccatagttctttctcttttgtgtgcattttggtgtccaccaagtgcctgtgaactataaaactttctttggcaatagtt |
163 |
Q |
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| T |
2867117 |
tcctctttttgctattgatctctctcttttgtgagcattttggtgtccacctaatgcttgtgagctatagaattttctatgacaatagtt |
2867206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 29335318 - 29335361
Alignment:
| Q |
90 |
gttctttctcttttgtgtgcattttggtgtccaccaagtgcctg |
133 |
Q |
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| T |
29335318 |
gttctttctctcttgtgtgcattttgatgaccaccaagtgcctg |
29335361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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