View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_11 (Length: 456)
Name: NF15431_low_11
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_11 |
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| [»] scaffold0415 (2 HSPs) |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 40812467 - 40812895
Alignment:
| Q |
18 |
gatgagacaatcagaggatgtggattcttgatgtggatgaaccttggccattttttgttactattatgattgtgatattcaagaggattgagcttctatt |
117 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40812467 |
gatgagagaatcagaggatgtggattcttgatgtggatgaactttggccattttttgttactattatgattgtgatattcaagaggattgagcttctatt |
40812566 |
T |
|
| Q |
118 |
aattggtgtatgttttgatttttgaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcctacactaacttgcctgtttcttagaagcacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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| T |
40812567 |
aattggtgtatgttttgatttttgaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcctacactaacttggctgtttcttagaagcgcc |
40812666 |
T |
|
| Q |
218 |
tttttggaaataataattcagttcaatgtactcgtggaaaaagtgattcaaattagttaattactaactgagtgacaagttcaaacccccggagttttca |
317 |
Q |
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| T |
40812667 |
tttttggaaataataattcagttcaatgtactcgtggaaaaagtgattcaaattagttaattagtaactgagtgacaagttcaaacccccggagttttca |
40812766 |
T |
|
| Q |
318 |
accaactttttcttattgannnnnnnatgggnnnnnnnntatccttatgcacaaatgtagagacaaattatttgagataaattcctctnnnnnnnnntaa |
417 |
Q |
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| T |
40812767 |
accaacttgttcttattgatttttttatgggaaaaaaaatatccttatgcacaaatgtagagacaaattatttgagataaattcc-ct-taaaaaaataa |
40812864 |
T |
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| Q |
418 |
gtaactgagatcaattcaaggagttcatctc |
448 |
Q |
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| T |
40812865 |
gtaactgagatcaattcaaggagttcatctc |
40812895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 36 - 188
Target Start/End: Original strand, 40817659 - 40817814
Alignment:
| Q |
36 |
tgtggattcttgatgtggatgaaccttggccattttttgttactattatgattgtgatattcaagaggattgagcttct-attaattggtgtatgttttg |
134 |
Q |
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|||||||||||| || |||| || |||||||| ||| |||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||||||| |
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| T |
40817659 |
tgtggattcttgttgaggataaattctggccattcttttttactattgtgattgtgatattcaagaggattgagcttataattaattgttgtatgttttg |
40817758 |
T |
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| Q |
135 |
atttttgaaagaagtgtggtgatcaacagcttatt--tatatgcctaatgttccta |
188 |
Q |
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| T |
40817759 |
atttttgaaagaagaggagtgattagcaacttatttatatatgcctaatgttccta |
40817814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 40805779 - 40805867
Alignment:
| Q |
38 |
tggattcttgatgtggatgaaccttggccattttttgttactattatgattgtgatattcaagaggattgagcttct-attaattggtg |
125 |
Q |
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| T |
40805779 |
tggattcttgatgtggataaactttggccattttttgttactattatgattgtgatattcaagaggatcaagcttctaattaattggtg |
40805867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 14738 - 14423
Alignment:
| Q |
18 |
gatgagacaatcagaggatgtggattcttgatgtggatgaaccttggccatttttt-gttactattatgattgtgatattcaagaggattgagcttctat |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14738 |
gatgagagaatcagaggatgtggattcttgatgtggatgaactttggccatttttttgttactattatgattgtgatattcaagaggattgagcttctat |
14639 |
T |
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| Q |
117 |
taattggtgtatgttttgattttt-gaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcctacactaacttgcctgtttcttagaagca |
215 |
Q |
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| T |
14638 |
taattggtgtatgttttgattttttgaaagaagtgtggtgatcaacagcttatttatatgcctaatgttcctacactaacttggctgtttcttagaagcg |
14539 |
T |
|
| Q |
216 |
cctttttggaaataataattcagttcaatgtactcgtgga-aaaagtgattcaaattagttaattactaactgagtgacaagttcaaacccccggagttt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
14538 |
cctttttggaaataataattcagttcaatgtactcgtggaaaaaagtgattcaaattagttaattagtaactgagtgacaagttcaaa-ccccggagttt |
14440 |
T |
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| Q |
315 |
tcaaccaactttttctt |
331 |
Q |
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| T |
14439 |
tcaaccaacttgttctt |
14423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 14393 - 14356
Alignment:
| Q |
357 |
tatccttatgcacaaatgtagagacaaattatttgaga |
394 |
Q |
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| T |
14393 |
tatccttatgcacaaatgtagagacaaattatttgaga |
14356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 38 - 125
Target Start/End: Complemental strand, 8865 - 8776
Alignment:
| Q |
38 |
tggattcttgatgtggatgaacctt-ggccattttttgttactattatgattgtgatattcaagaggattgagcttct-attaattggtg |
125 |
Q |
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| T |
8865 |
tggattcttgatgtggataaaactttggccattttttgttactattatgattgtgatattcaagaggatcaagcttctaattaattggtg |
8776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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