View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_12 (Length: 451)
Name: NF15431_low_12
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 1911712 - 1912154
Alignment:
| Q |
1 |
agtgtgtttaaggactggtggtggaaggtggtggggtgaggaatgggaaaatggttgaaaatttggggatggagggaatgtttgggaatggaggacagtc |
100 |
Q |
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| T |
1911712 |
agtgtgtttaaggactggtggtggaaggtggtggggtgaggaatgggaaaatggttgaaaatttggggatggagggaatgtttgggaatggaggacaatc |
1911811 |
T |
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| Q |
101 |
tggcttaggcagtggtggaaatgaaaatgaaggcaatggtggaaagcctgggaaatttgttaaagcttgttcagtagtacttgcttgcaaaagatttcta |
200 |
Q |
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| T |
1911812 |
tggcttaggcagtggtggaaatgaaaatgaaggcaatggtggaaagcctgggaaatttgttaaagcttgttcagtagtacttgcttgcaaaagatttcta |
1911911 |
T |
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| Q |
201 |
gctgctaggctcaagctcatgtttgagaagcttaaagcaaaaaagaaaattatgatgaaggatttctttgaggccatggttaagaatgaagaggaatgtt |
300 |
Q |
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| T |
1911912 |
gctgctaggctcaagctcatgtttgagaagcttaaagcaaaaaagaaaattatgatgaaggatttctttgaggccatggttaagaatgaagaggaatgtt |
1912011 |
T |
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| Q |
301 |
gcaaaatatgcaaatgggagatatggtttgaaattgtatgtgaggctaaaggggaatgtttggtaaatatatatagagttagagtgaaactaatttagtg |
400 |
Q |
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| T |
1912012 |
gcaaaatatgcaaatgggagatatggtttgaaattgtatgtgaggctaaaggggaatgtttggtaaatatatatagagttagagtgaaactaatttagtg |
1912111 |
T |
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| Q |
401 |
aac--nnnnnnnngtcttagcaatttttgttagctcacctttg |
441 |
Q |
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||| |||||||||||||||||||||||||||||| |
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| T |
1912112 |
aacaaaaaaaaaagtcttagcaatttttgttagctcacctttg |
1912154 |
T |
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