View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15431_low_14 (Length: 423)
Name: NF15431_low_14
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 23 - 412
Target Start/End: Original strand, 46566469 - 46566858
Alignment:
| Q |
23 |
aggtcatctacaatcagatccatcttctcccttcaatgtgatgctagtttgatcccaataacttgtccccaatagagcaaggttgttcaagggtaattga |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46566469 |
aggtcatctacaatcagatccatcttctcccttcaatgtgatgctagtttgatcccaataacttgtctccaatagagcaaggttgttcaagggtaattga |
46566568 |
T |
|
| Q |
123 |
ggatctccaattaaagattcatatgtggtacataagtctgagaacctactttttgagttcttcaccaataccaatggagtttgtcaccgttgaaaccaag |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46566569 |
ggatctccaattagagattcatatgtggtacataagtatgagaacctactttttcagttcttcaccaataccaatggagtttgtcaccgttgaaaccaag |
46566668 |
T |
|
| Q |
223 |
ttcttccacaaacatcagtacaccgagataaattttataatccattttataacaacatatgagataaatgcttaatatatttgtgaacagaatccttctt |
322 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46566669 |
ttcttccacaagcatcagtacaccgagataaattttgcgatccattttataacaacatatgagataaatgcttaatatatttgtgaacagaaaccttctt |
46566768 |
T |
|
| Q |
323 |
agtgatttctggagttagtatgaacggtcaaagcagaatgtcccacaacaacttgtatttcaaatcacttttaaatttgatattgttcat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46566769 |
agtgatttctggagttagtatgaacggtcaaagcagaatgtcccacagcaacttgtatttcaaatcacttttaaatttgatattgttcat |
46566858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University