View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_15 (Length: 419)
Name: NF15431_low_15
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 148 - 405
Target Start/End: Original strand, 52343868 - 52344125
Alignment:
| Q |
148 |
ttccctttgacgcaccaaatgatatgataaattaaacattttccttttcttaatcctatctgtctgacatttgtgatttctatcataagtttatgttgta |
247 |
Q |
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| T |
52343868 |
ttccgtttgacgcaccaaaggatatgataaattaaacattttccttttcttaatcctatctgtctgacatttgtgatttctatcacaagtttatgttgta |
52343967 |
T |
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| Q |
248 |
ttagaaacttccccactctctcaccctcgctctttccctcctttcctctctttctcatccaccattaatgacgaaaggaaccaccgaaatgattaattga |
347 |
Q |
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| T |
52343968 |
ttagaaacttccccactctctcaccctcgctctttccctcctttcctctctttctcatccaccattaatgacgaaaggaaccaccgaaatgattaattga |
52344067 |
T |
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| Q |
348 |
ttcacacaattcccatcactctcagacaacaagttggcacacaacaacttttcaatcc |
405 |
Q |
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| T |
52344068 |
ttcatacaattcccatcactctcagacaacaagttggcacacaacaacttttcaatcc |
52344125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 52343598 - 52343655
Alignment:
| Q |
67 |
gttacagataccaaattcagatattttaacctttttatttgcatttttattgtttgat |
124 |
Q |
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| T |
52343598 |
gttacagataccaaattcagagattttaacctttttatttgcatttttattgtttgat |
52343655 |
T |
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