View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_16 (Length: 419)
Name: NF15431_low_16
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 26 - 411
Target Start/End: Original strand, 40141793 - 40142179
Alignment:
| Q |
26 |
gcagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtg |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
40141793 |
gcagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctatttactgatatgtg |
40141892 |
T |
|
| Q |
126 |
atatggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatca |
225 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40141893 |
atctggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatca |
40141992 |
T |
|
| Q |
226 |
tatagaaattaaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaatta |
325 |
Q |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
40141993 |
tatagaaattacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaaccttagatgatttataattcctgcaaattta |
40142092 |
T |
|
| Q |
326 |
actctgagctgattgtataacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag-taatcagcctatgct |
411 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
40142093 |
actctgagctgattgtataacttgtatgtattatgtataacaatctgaaacttgtagttttggtaaatgagttaatcagcctatgct |
40142179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 35258690 - 35258642
Alignment:
| Q |
44 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctctt |
92 |
Q |
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| T |
35258690 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctctt |
35258642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 13858654 - 13858295
Alignment:
| Q |
20 |
tggagtgcagagaattattatgcagtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactga |
119 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13858654 |
tggagtgcagagaattattatgcagtagtttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactga |
13858555 |
T |
|
| Q |
120 |
tatgtgatatggttgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctga |
219 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13858554 |
tatgtgatctggttgtaaggtaagtgaattttgtagcttcatgcttttctgcagaaggtagttgatctcaggggataatccgtagatatgaattttctga |
13858455 |
T |
|
| Q |
220 |
gtatcatatagaaattaaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgca |
319 |
Q |
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|
||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13858454 |
gtatcatatag-aattacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaaccttagatgatttataattcctgca |
13858356 |
T |
|
| Q |
320 |
aaattaactctgagctgattgtataacttgtaagtattatgtataacaatctgaaacttgt |
380 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
13858355 |
aaattaactctgagctgattgtataacttgtatgtattatgtataacaatctgaaacttgt |
13858295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 44 - 411
Target Start/End: Original strand, 32028914 - 32029275
Alignment:
| Q |
44 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatatggttgtaaggtaag |
143 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32028914 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaaattgatacctagttactgatatgtgatctggttgtaaggtaag |
32029013 |
T |
|
| Q |
144 |
tgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaaattaaatagta |
243 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
32029014 |
tgaattttgtagcttcat------ctgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatata-aaattacatagta |
32029106 |
T |
|
| Q |
244 |
gctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctgagctgattgtat |
343 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32029107 |
gctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactctgagctgattgtat |
32029206 |
T |
|
| Q |
344 |
aacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag-taatcagcctatgct |
411 |
Q |
| |
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|| | || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32029207 |
aatgtatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttaatcagcctatgct |
32029275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 133 - 411
Target Start/End: Complemental strand, 9540514 - 9540236
Alignment:
| Q |
133 |
tgtaaggtaagtgaattttgtagcttcatgctttactgcagaaggtagttgatctcaggggataatccgtagatatgaattttctgagtatcatatagaa |
232 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
9540514 |
tgtaaggtaagtgaagcttgtagcttcatgcttttctgcagaaggtagttgatctcaagggataatccgtagatatgaattttctgagtatcatata-aa |
9540416 |
T |
|
| Q |
233 |
attaaatagtagctggctttatgcgacaacaactttttgagtttctagctttatttgttcgaccttagatgatttataattcctgcaaaattaactctga |
332 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||| |
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| T |
9540415 |
attacatagtagctggctttatgtgacaacaactttttgagtttctagctttatttgttcaagcttagatgatttataattcctgcaaaattaactttga |
9540316 |
T |
|
| Q |
333 |
gctgattgtataacttgtaagtattatgtataacaatctgaaacttgtagttttcgtaaatgag-taatcagcctatgct |
411 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
9540315 |
gctgattgtataacttatatgtattatgtataacaatctgaaacttgtagttttcgtaaatgagttcatcagcctatgct |
9540236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 26053240 - 26053296
Alignment:
| Q |
44 |
gtagcttggttttgatatgatttcatgtgataagccatactttcctcttggtagtaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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|
| T |
26053240 |
gtagcttggttttgatatgatttcatgtgataagccatacttacctcttggcagtaa |
26053296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 8635802 - 8635843
Alignment:
| Q |
44 |
gtagcttggttttgatatgatttcatgtgataagccatactt |
85 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
8635802 |
gtagcttggttttgatatgatttcatgtgataaaccatactt |
8635843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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