View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_17 (Length: 396)
Name: NF15431_low_17
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 190 - 386
Target Start/End: Complemental strand, 41414622 - 41414426
Alignment:
| Q |
190 |
ggaattggataaacttattgtaataattgaaatgagcttatgcatctcaattttgtcaaaatctgtctcgtttaacttctacacaaatatctataaactt |
289 |
Q |
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| T |
41414622 |
ggaattggataaacttattgtaataattgaaattagcttatgcatctcaattttgtcaaaatctgtctcgtttaacttctacacaaatatctataaactt |
41414523 |
T |
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| Q |
290 |
gtaacaagcatcnnnnnnntatttatggcttcccttttcaccttattacgtagccatcattttcaccttattattttgactgattggtattcctatg |
386 |
Q |
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| T |
41414522 |
gtaacaagcatcaaaaaaatatttatggcttcccttttcaccttattacgtagccatcattttcaccttattattttgactgattgatattactatg |
41414426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 41414803 - 41414654
Alignment:
| Q |
1 |
tcggtagcaatcgccacaaaaatcgaaactcactacctccctgcagtctgtagatgtatatatctagacaacatttgtacatacagaccacaaattatca |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41414803 |
tcggtagcaatcgccacaaaaatcgaaactcattacctccctgcagtctgtagatgtatatatctagacaacatttgtacatacagaccacaaattatca |
41414704 |
T |
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| Q |
101 |
cagtgcagataaataaacaagacatggacctctagtttggataaacttttcc |
152 |
Q |
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| T |
41414703 |
cactgcagataaataaacaagacatagac--ctagtttggataaacttttcc |
41414654 |
T |
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