View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_18 (Length: 395)
Name: NF15431_low_18
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 44330122 - 44330508
Alignment:
| Q |
1 |
gaagtagtaattatgaatcgaattatgcacgtggctgtggttagttagttattgacgatttctgttatgtttaggtacaatctttggtaattgtagattt |
100 |
Q |
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| T |
44330122 |
gaagtagtaattatgaatcgaattatgcacgtggctgtggttagttagttattgacgatttctgttatgttaaggtacaatctttggtaattgtagattt |
44330221 |
T |
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| Q |
101 |
gataggaatatttagtatcgttgttaatttttataaattatgttcttaggttgatcctgcgaacaaccttcctttggaatgtgtgataaagagagtgttc |
200 |
Q |
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| T |
44330222 |
gataggaatatttagtatcgttgttaatttttataaattatgttcttaggttgatcctgcgaacaaccttcctttggaatgtgtgataaagagagtgttc |
44330321 |
T |
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| Q |
201 |
acgagttctcgaggagatgattgtatgttgctatgcccacttgacatgtaagttaaatgttcttaaggtttaattcatggtcttgtatgattacagttta |
300 |
Q |
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| T |
44330322 |
acgagttctcgaggagatgattgtatgttgctatgcccacttgacatgtaagttaaatgttcttaaggtttaattcatggtcttgtatgattacagttta |
44330421 |
T |
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| Q |
301 |
tatatctaaggttttaggggtgaaagacgtggtgtctaaatcatatgtatggttgtttttagcctaatgtgaaatctatgtgatgat |
387 |
Q |
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| T |
44330422 |
tatatctaaggttttaggggtgaaagacctggtgtctaaatcatatgtatggttgtttttagcctaatgtgaaatctatgtgatgat |
44330508 |
T |
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