View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_19 (Length: 391)
Name: NF15431_low_19
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 291
Target Start/End: Original strand, 42991763 - 42992049
Alignment:
| Q |
6 |
aatatattcctgtaactctcatataattttattatgtttgaagaatattattctaaattgatagcatattgaaataaaaacgaaagagatgttgaatatc |
105 |
Q |
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| T |
42991763 |
aatatattcctgtaactctcatataattttattatgtttgaagaatattattctaaatttatagcatattgaaataaaaacgaaagagatgttgaatatc |
42991862 |
T |
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| Q |
106 |
tctatattatgagacaaattttagataaaataaatgcagtgaaaaagttacatgtcttttcatatggattgactaccattagattagtacaattgaagca |
205 |
Q |
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| T |
42991863 |
tctatattatgagacaaattttagataaaataaatgcagtgaaaaagttacatatctttttatatggattgactacgattagattagtacaattgaagca |
42991962 |
T |
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| Q |
206 |
catactattgaaaactt-aaagtttacgaatcatattaagtttgtcacaatgacaacttctaaatggaattattcgcccttgataga |
291 |
Q |
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| T |
42991963 |
catactattaaaaacttaaaagtttacgaatcatattaagtttgtcacaatgacaactttcaaatggaattattcgccattgataga |
42992049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 42992083 - 42992183
Alignment:
| Q |
291 |
atctcttgggcttcttcctattccttgagtcataatgcaatacgtcgtatatttgaacaagatcaaatgtaggttgatcttctcattcttgtccagatgg |
390 |
Q |
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| T |
42992083 |
atctcttgggcttcttcctattccttgagtcataatgcaatacgtcgtatatttgaacaagatcaaatgtaggttgatcttctcattcttgtccagatgg |
42992182 |
T |
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| Q |
391 |
t |
391 |
Q |
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| T |
42992183 |
t |
42992183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 43072326 - 43072371
Alignment:
| Q |
346 |
aacaagatcaaatgtaggttgatcttctcattcttgtccagatggt |
391 |
Q |
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| T |
43072326 |
aacaagatcaaaggtaggttgatcttatcattcttgttcagatggt |
43072371 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 18901946 - 18901791
Alignment:
| Q |
94 |
atgttgaatatctctatattatgagacaaattttagataaaataaatgcagtgaaaaagttacatgtcttttcatatggattgactaccattagattagt |
193 |
Q |
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| T |
18901946 |
atgttgaatatctcaatattacgagacaaaattttgataaa-taagtgtagtgaaaatgttacatgtattttcatctagattgactgcaaatatattagt |
18901848 |
T |
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| Q |
194 |
acaattgaagcacatactattgaaaacttaaagtttacgaatcatattaagtttgtc |
250 |
Q |
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| T |
18901847 |
ttaatttaagcacatattattgtaaacttgaagtttacaaatcatattaagtttgtc |
18901791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 165
Target Start/End: Complemental strand, 18787386 - 18787308
Alignment:
| Q |
87 |
gaaagagatgttgaatatctctatattatgagacaaattttagataaaataaatgcagtgaaaaagttacatgtctttt |
165 |
Q |
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| T |
18787386 |
gaaagagatgttgaatatctccatattacgagacttattttggataaaataagtgttgtaaaaatgttacatgtctttt |
18787308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 57 - 172
Target Start/End: Complemental strand, 25415386 - 25415270
Alignment:
| Q |
57 |
tctaaattgatagcatattgaaa-taaaaacgaaagagatgttgaatatctctatattatgagacaaattttagataaaataaatgcagtgaaaaagtta |
155 |
Q |
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| T |
25415386 |
tctaaatagatatcatattgaaactagaaatgaaggagatgttgaatatctttatgtaacgagacataatttggttaaaataagtgtagtgaaaaagtta |
25415287 |
T |
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| Q |
156 |
catgtcttttcatatgg |
172 |
Q |
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| T |
25415286 |
cttgccttttcctatgg |
25415270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 144882 - 144838
Alignment:
| Q |
133 |
aaataaatgcagtgaaaaagttacatgtcttttcatatggattga |
177 |
Q |
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| T |
144882 |
aaataagtgtagtgaaaaagttacatgtcttttcatctggattga |
144838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 108
Target Start/End: Original strand, 26557292 - 26557368
Alignment:
| Q |
33 |
tttattatgtttgaagaatattattctaaattgatagcatattgaaataa-aaacgaaagagatgttgaatatctct |
108 |
Q |
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||||||| |||| || ||||| ||||||||||||| |||||| |||||| ||| ||| |||||||| ||||||||| |
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| T |
26557292 |
tttattaagtttaaatgatattcttctaaattgatatcatattaaaataagaaatgaatgagatgttcaatatctct |
26557368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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