View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15431_low_2 (Length: 599)

Name: NF15431_low_2
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15431_low_2
NF15431_low_2
[»] chr8 (26 HSPs)
chr8 (280-587)||(27056562-27056863)
chr8 (94-288)||(27056336-27056532)
chr8 (280-432)||(9642358-9642504)
chr8 (1-61)||(27056244-27056304)
chr8 (280-376)||(29108829-29108920)
chr8 (221-295)||(15068498-15068572)
chr8 (280-376)||(39445583-39445674)
chr8 (280-372)||(17469249-17469336)
chr8 (280-376)||(27932403-27932494)
chr8 (280-376)||(32303051-32303142)
chr8 (394-432)||(9434978-9435016)
chr8 (225-291)||(9642277-9642343)
chr8 (282-376)||(45236055-45236144)
chr8 (280-376)||(8545356-8545447)
chr8 (280-375)||(20399583-20399673)
chr8 (279-324)||(15068594-15068639)
chr8 (280-331)||(10297488-10297539)
chr8 (280-376)||(24927939-24928030)
chr8 (400-439)||(36274971-36275010)
chr8 (221-291)||(24928057-24928127)
chr8 (338-376)||(30481481-30481519)
chr8 (221-291)||(32303169-32303239)
chr8 (338-375)||(1012610-1012647)
chr8 (226-291)||(9435153-9435218)
chr8 (280-324)||(1063544-1063588)
chr8 (280-324)||(5858659-5858703)
[»] chr7 (38 HSPs)
chr7 (280-587)||(5565314-5565616)
chr7 (280-432)||(10995841-10995982)
chr7 (220-291)||(5565216-5565287)
chr7 (403-494)||(27896603-27896694)
chr7 (280-376)||(45380102-45380193)
chr7 (280-376)||(10072461-10072552)
chr7 (282-376)||(33841073-33841162)
chr7 (281-375)||(12980373-12980462)
chr7 (280-376)||(16866164-16866255)
chr7 (280-374)||(18825879-18825968)
chr7 (280-376)||(3226953-3227044)
chr7 (279-331)||(18684009-18684061)
chr7 (280-324)||(27850333-27850377)
chr7 (280-376)||(17885460-17885551)
chr7 (280-376)||(21702654-21702745)
chr7 (280-331)||(31426043-31426094)
chr7 (280-376)||(35074465-35074556)
chr7 (280-376)||(39456022-39456112)
chr7 (280-331)||(42908048-42908099)
chr7 (280-376)||(43507440-43507531)
chr7 (394-432)||(8906704-8906742)
chr7 (281-330)||(3157119-3157168)
chr7 (283-360)||(32546203-32546275)
chr7 (282-357)||(29014961-29015037)
chr7 (280-324)||(41103698-41103742)
chr7 (280-360)||(5377096-5377171)
chr7 (280-360)||(22973399-22973474)
chr7 (225-287)||(8906503-8906565)
chr7 (221-291)||(17885578-17885648)
chr7 (280-370)||(27896482-27896567)
chr7 (221-291)||(35074583-35074653)
chr7 (222-291)||(10072579-10072648)
chr7 (283-320)||(10990871-10990908)
chr7 (282-331)||(30839143-30839192)
chr7 (280-324)||(16079055-16079099)
chr7 (280-324)||(28309534-28309578)
chr7 (280-324)||(41741457-41741501)
chr7 (221-289)||(44734269-44734337)
[»] chr4 (33 HSPs)
chr4 (281-556)||(10301900-10302170)
chr4 (222-291)||(10302198-10302267)
chr4 (280-360)||(29527824-29527899)
chr4 (414-470)||(45275362-45275418)
chr4 (280-376)||(5902622-5902713)
chr4 (280-376)||(6382280-6382371)
chr4 (280-376)||(7608966-7609057)
chr4 (280-331)||(43309519-43309570)
chr4 (280-376)||(44317531-44317622)
chr4 (280-375)||(1724318-1724408)
chr4 (394-432)||(3737720-3737758)
chr4 (282-376)||(47550363-47550452)
chr4 (280-324)||(32596192-32596236)
chr4 (280-376)||(11028069-11028160)
chr4 (280-323)||(12825469-12825512)
chr4 (280-376)||(31752452-31752543)
chr4 (280-376)||(48459477-48459568)
chr4 (280-375)||(6482043-6482133)
chr4 (284-375)||(26564828-26564914)
chr4 (221-295)||(45065359-45065433)
chr4 (219-331)||(31782649-31782768)
chr4 (283-324)||(39375321-39375362)
chr4 (219-291)||(37349226-37349298)
chr4 (220-295)||(1866459-1866534)
chr4 (280-359)||(3737789-3737863)
chr4 (282-374)||(15987272-15987359)
chr4 (280-376)||(31918566-31918657)
chr4 (280-331)||(41915004-41915055)
chr4 (249-295)||(10574370-10574416)
chr4 (394-432)||(43309426-43309464)
chr4 (221-291)||(43893341-43893411)
chr4 (283-331)||(10574430-10574478)
chr4 (280-320)||(11173020-11173060)
[»] chr2 (20 HSPs)
chr2 (394-501)||(10212273-10212380)
chr2 (225-288)||(22900906-22900969)
chr2 (280-432)||(22900729-22900876)
chr2 (280-376)||(15546735-15546826)
chr2 (280-376)||(7314655-7314746)
chr2 (281-376)||(24414140-24414230)
chr2 (221-286)||(10212520-10212585)
chr2 (280-324)||(37106730-37106774)
chr2 (280-372)||(30846941-30847028)
chr2 (220-291)||(30847055-30847126)
chr2 (280-376)||(37999474-37999565)
chr2 (225-291)||(15546853-15546919)
chr2 (282-360)||(38342528-38342601)
chr2 (399-432)||(15546676-15546709)
chr2 (283-324)||(37472769-37472810)
chr2 (221-282)||(39256370-39256431)
chr2 (282-331)||(43371584-43371633)
chr2 (280-360)||(14331534-14331609)
chr2 (221-291)||(6027811-6027881)
chr2 (221-295)||(26755845-26755919)
[»] chr1 (33 HSPs)
chr1 (394-516)||(38686514-38686641)
chr1 (282-432)||(10778576-10778721)
chr1 (280-376)||(29936407-29936498)
chr1 (280-430)||(34085170-34085317)
chr1 (280-376)||(18354087-18354178)
chr1 (280-324)||(5181077-5181121)
chr1 (280-376)||(17134938-17135029)
chr1 (220-295)||(19003575-19003650)
chr1 (280-376)||(19572519-19572610)
chr1 (280-376)||(36187227-36187318)
chr1 (282-376)||(28297925-28298014)
chr1 (279-331)||(19003672-19003724)
chr1 (281-324)||(3627993-3628036)
chr1 (280-331)||(16237311-16237362)
chr1 (280-376)||(23490778-23490869)
chr1 (280-376)||(51421849-51421940)
chr1 (221-291)||(20774675-20774745)
chr1 (221-287)||(38686763-38686829)
chr1 (271-321)||(44632139-44632189)
chr1 (280-324)||(24710885-24710929)
chr1 (248-295)||(10450014-10450061)
chr1 (338-376)||(13390404-13390442)
chr1 (338-376)||(23966864-23966902)
chr1 (221-291)||(29936531-29936601)
chr1 (280-330)||(33293538-33293588)
chr1 (282-324)||(42707846-42707888)
chr1 (280-321)||(16408983-16409024)
chr1 (282-323)||(16433176-16433217)
chr1 (280-320)||(23968621-23968661)
chr1 (280-324)||(35936836-35936880)
chr1 (219-295)||(37032416-37032492)
chr1 (249-285)||(39219361-39219397)
chr1 (394-439)||(45460157-45460204)
[»] chr3 (22 HSPs)
chr3 (397-501)||(10043401-10043505)
chr3 (280-432)||(30616288-30616437)
chr3 (280-376)||(23546949-23547040)
chr3 (280-376)||(44172616-44172707)
chr3 (280-376)||(44179316-44179407)
chr3 (281-376)||(39728661-39728751)
chr3 (280-324)||(48390824-48390868)
chr3 (280-363)||(10043289-10043367)
chr3 (220-291)||(39655182-39655253)
chr3 (280-375)||(4016051-4016141)
chr3 (221-291)||(7469688-7469758)
chr3 (338-376)||(34154404-34154442)
chr3 (280-324)||(44953442-44953486)
chr3 (220-295)||(1772308-1772383)
chr3 (224-287)||(10043195-10043258)
chr3 (280-376)||(34025944-34026035)
chr3 (280-376)||(39655280-39655371)
chr3 (280-376)||(49580054-49580145)
chr3 (339-376)||(22535902-22535939)
chr3 (280-374)||(44252739-44252828)
chr3 (280-321)||(49025720-49025761)
chr3 (282-322)||(43582616-43582656)
[»] scaffold0036 (1 HSPs)
scaffold0036 (280-375)||(33384-33474)
[»] chr6 (23 HSPs)
chr6 (280-376)||(5863390-5863481)
chr6 (280-376)||(27738762-27738853)
chr6 (280-376)||(32532530-32532621)
chr6 (280-376)||(32853834-32853925)
chr6 (280-375)||(2367317-2367407)
chr6 (280-376)||(3483930-3484021)
chr6 (280-376)||(32053078-32053169)
chr6 (221-291)||(3483833-3483903)
chr6 (282-369)||(14410864-14410946)
chr6 (222-291)||(10187991-10188060)
chr6 (280-321)||(18908933-18908974)
chr6 (283-365)||(29199895-29199972)
chr6 (284-324)||(20610993-20611033)
chr6 (280-360)||(28079703-28079778)
chr6 (280-324)||(30986290-30986334)
chr6 (280-376)||(10142525-10142616)
chr6 (280-376)||(12141375-12141466)
chr6 (283-330)||(20349095-20349142)
chr6 (220-291)||(30986361-30986432)
chr6 (221-291)||(31496542-31496612)
chr6 (221-291)||(31501928-31501998)
chr6 (280-321)||(14506126-14506167)
chr6 (288-324)||(9442467-9442503)
[»] chr5 (22 HSPs)
chr5 (280-376)||(4583109-4583200)
chr5 (280-376)||(4920816-4920907)
chr5 (219-290)||(10822447-10822518)
chr5 (280-359)||(10822534-10822608)
chr5 (280-376)||(15890197-15890287)
chr5 (280-376)||(17853301-17853391)
chr5 (221-295)||(2681320-2681394)
chr5 (394-432)||(10822647-10822685)
chr5 (282-376)||(12866561-12866650)
chr5 (281-358)||(23045000-23045072)
chr5 (283-360)||(28569032-28569104)
chr5 (284-376)||(22694913-22695000)
chr5 (338-376)||(1218745-1218783)
chr5 (221-287)||(4920938-4921004)
chr5 (338-376)||(10127071-10127109)
chr5 (338-376)||(12834635-12834673)
chr5 (217-295)||(23044898-23044976)
chr5 (252-321)||(27302714-27302784)
chr5 (221-291)||(33727912-33727982)
chr5 (283-324)||(33728012-33728053)
chr5 (280-321)||(38006477-38006518)
chr5 (220-308)||(18451833-18451921)
[»] scaffold0008 (2 HSPs)
scaffold0008 (221-295)||(67853-67927)
scaffold0008 (221-295)||(75696-75770)
[»] scaffold0244 (1 HSPs)
scaffold0244 (281-330)||(4589-4638)
[»] scaffold0022 (1 HSPs)
scaffold0022 (280-324)||(90634-90678)


Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 280 - 587
Target Start/End: Original strand, 27056562 - 27056863
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 379  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||     |||||||||||||||||| ||||||||||||||||||       
T  27056562 gggtttttcccgatttcaaagtacaggtatgggacgggtaacggggttatatcta-----cccaccccgaacccatacacatactcgtcccaaatgtaaa 27056656  T
Q  380 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttc 479  Q
        |||       ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  27056657 aaa-ttacttttttacccccttttatataaatagaaacacaacgctagatcatttcactccagtccaaaaggcagatgtcattgtcagacgacacttttc 27056755  T
Q  480 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctaggttcatttcattcacaacgctgatcacatttctgggt 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27056756 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctgggttcatttcattcacaacgctgatcacatttctgggt 27056855  T
Q  580 tcatttca 587  Q
    ||||||||    
T  27056856 tcatttca 27056863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 94 - 288
Target Start/End: Original strand, 27056336 - 27056532
Alignment:
Q  94 tactaagaacttcattatattctctgaattaatnnnnnnnn--gtttgcgacctaaaatgggcaaaccgagccaaccaaactgaacaatttgccgaaccg 191  Q
    |||||||||||||||||||||||||||||||||          |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  27056336 tactaagaacttcattatattctctgaattaataaaaaaaaaagtttgcgaccaaaaatgggcaaaccgagccaaccaaactgaacaatttgctgaaccg 27056435  T
Q  192 gaaagctgtaatccgttcaaaccgattcttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcc 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| | ||||||||||||||||    
T  27056436 gaaagctgtaatccgttcaaaccgattcttaggcatggcaacaatacccgtcctcgtgggtatccgcccatactcatctcgatttgacgggttttcc 27056532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 280 - 432
Target Start/End: Original strand, 9642358 - 9642504
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 379  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||     || || ||| ||||||||||||| ||||| ||||||||||||       
T  9642358 gggttttccccgatttcaaaacacgggtatgggacgggtaacggggttat-----atatatccatcccgaacccatactcatacccgtcccaaatgt-aa 9642451  T
Q  380 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 432  Q
        |||       |||||||||||||||||||||||||||||||||||||||    
T  9642452 aaaattatttttttacccctttttatataaatagaaacacaaccctagatcat 9642504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 27056244 - 27056304
Alignment:
Q  1 aagatctggagatgcattttacttttatttgttgatgttttcaagatctagaaaataaatc 61  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  27056244 aagatctggagatgcattttacttttatttgttgatgttttcgagatccagaaaataaatc 27056304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 29108829 - 29108920
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||| |||||||| |||  | |||||||||||||||||||||  |||||   || |||||||||||||||||||||||||| ||||||||||||    
T  29108829 gggtttttcccgattttaaaacatgggtatgggacgggtaacggg--tatat---atgtacccaccccgaacccatacccatacccgtcccaaatgt 29108920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 221 - 295
Target Start/End: Original strand, 15068498 - 15068572
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||| |||||||||||||||||||||||    
T  15068498 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccgatttgacgggttttccccgattt 15068572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 39445583 - 39445674
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||| ||||||||||||  ||||||||||||| ||||||||| ||||     |  |||||||||||||| ||||||||||| ||||||||||||    
T  39445583 gggtttttcccgatttcaaaacacgggtatgggacaggtaacgggtttat-----aggtacccaccccgaactcatacccatacccgtcccaaatgt 39445674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 17469336 - 17469249
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 372  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||| |||||||||||| || ||||||||    
T  17469336 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccaaacccatacccaaacccgtcccaa 17469249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 27932494 - 27932403
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  |||||||||||||| ||||||||  |||||   |  |||||||||||||||||||| ||||  ||||||||||||    
T  27932494 gggttttccccgatttcaaaacacgggtatgggacgagtaacggg--tatat---aggtacccaccccgaacccatactcatatccgtcccaaatgt 27932403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 32303142 - 32303051
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  32303142 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 32303051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 9435016 - 9434978
Alignment:
Q  394 acccctttttatataaatagaaacacaaccctagatcat 432  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9435016 acccctttttatataaatagaaacacaaccctagatcat 9434978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 9642277 - 9642343
Alignment:
Q  225 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||||||||| ||||| | |||||||||| ||| |||||||||  ||||||||||||||||||    
T  9642277 catggcaacaatactcgtccccatgggtacccgtccagacccatcccggtttgacgggttttccccg 9642343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 45236144 - 45236055
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||| |||||||||  ||||||||||||||||||| |||  |||||   |  ||||||||||||||||||| |||||| ||||||||||||    
T  45236144 gttttccctgatttcaaaacacgggtatgggacgggtaatggg--tatat---aggtacccaccccgaacccatatccatacccgtcccaaatgt 45236055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 8545356 - 8545447
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||| |||||||||||  |||||||||| ||| ||||||||| ||||  ||     |||||||||||||||||| || |||||||||||||||    
T  8545356 gggttttctccgatttcaaaacacgggtatggaacgagtaacggggatatagata-----cccaccccgaacccatactcaaactcgtcccaaatgt 8545447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 20399673 - 20399583
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    |||||||| |||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||||||||||| |||| || |||||| ||||    
T  20399673 gggttttctccgatttcaaaacacgggtatgggacgggtaacggg--tatat---agatacccaccccgaacccattcccaaacccgtcccgaatg 20399583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 279 - 324
Target Start/End: Original strand, 15068594 - 15068639
Alignment:
Q  279 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||| |||||||| ||||| |||||||||    
T  15068594 cgggttttccccgatttcaaaatacgggtacgggacaggtaacggg 15068639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 10297539 - 10297488
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||||||||||||||| |||||| | ||||| |||||||||| |||||    
T  10297539 gggttttccccgatttcaaaatacggggacgggacaggtaacggggatatat 10297488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 24928030 - 24927939
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||| ||| || ||  ||||||||| |||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  24928030 gggttttccctgatctcgaaacacgggtatgagacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 24927939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 439
Target Start/End: Complemental strand, 36275010 - 36274971
Alignment:
Q  400 ttttatataaatagaaacacaaccctagatcatttcactc 439  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  36275010 ttttatataaatagaaacccaaccctaaatcatttcactc 36274971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 24928127 - 24928057
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | || || |||||||||  ||| | |||||||||||||||||||||||    
T  24928127 taggcatggcaacaaaacccatacccgcggttacccgcccgaaccaaacccaatttgacgggttttccccg 24928057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 30481481 - 30481519
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||||| ||||||||| |||||    
T  30481481 tacccaccccgaacccatacccaaactcgtcccgaatgt 30481519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 32303239 - 32303169
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||||||||  | | | |||||||||||||||||||||||    
T  32303239 taggcatggcaacaaaacccatacccgtggttacccgcccgaaacaaacccaatttgacgggttttccccg 32303169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 338 - 375
Target Start/End: Complemental strand, 1012647 - 1012610
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    ||||||||||||||||||||||| ||||||||| ||||    
T  1012647 tacccaccccgaacccatacccaaactcgtcccgaatg 1012610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 9435218 - 9435153
Alignment:
Q  226 atggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||||| | | |||||| ||||||| | ||| ||| ||||||||||| |||||||    
T  9435218 atggcaacaatacccgttcccatgggtatccgcccaaatccaccccgatttgacgggtattccccg 9435153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 1063588 - 1063544
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||| ||||||||||||  ||||||||||||||| |||||||    
T  1063588 gggtttttcccgatttcaaaacacgggtatgggacggttaacggg 1063544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 5858659 - 5858703
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||| |||||||| |||  |||||||||||||||||||||||    
T  5858659 gggtttttcccgatttaaaaacacgggtatgggacgggtaacggg 5858703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 280 - 587
Target Start/End: Original strand, 5565314 - 5565616
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 379  Q
    |||||||||| ||||||||||||||| ||||||| ||||||||||||||||| ||     |||||||| ||||||||||||||| | ||||||||||       
T  5565314 gggttttccctgatttcaaagtacggatatgggatgggtaacggggttatatgta-----cccacccctaacccatacccatacacatcccaaatgtaaa 5565408  T
Q  380 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttc 479  Q
        |         ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5565409 aaattactttttttacccccttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggcacttttc 5565508  T
Q  480 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctaggttcatttcattcacaacgctgatcacatttctgggt 579  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  5565509 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctgggttcatttctttcacaacgctgatcacatttctgggt 5565608  T
Q  580 tcatttca 587  Q
    ||||||||    
T  5565609 tcatttca 5565616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 280 - 432
Target Start/End: Original strand, 10995841 - 10995982
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 379  Q
    |||||||||||||||||||   |||||||||||||||||||| |||||||     || |||||||||||||||||||||||||| ||| ||||||||       
T  10995841 gggttttccccgatttcaagacacgggtatgggacgggtaacagggttat-----atatacccaccccgaacccatacccatacccgttccaaatgtaat 10995935  T
Q  380 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 432  Q
        ||        ||||||||||||||||||||||||||||||||| |||||    
T  10995936 tttttt------ttacccctttttatataaatagaaacacaaccctatatcat 10995982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 5565216 - 5565287
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||| ||||||||||||||| | |||||||||||||||||||| ||| ||||||||| |||||||||    
T  5565216 ttaggcatgacaacaatacccgtccccatgggtacccgcccatacccaccccgatttgacggattttccccg 5565287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 494
Target Start/End: Original strand, 27896603 - 27896694
Alignment:
Q  403 tatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctcaa 494  Q
    |||||||||| |||||||| |||||||||||||||||| ||||||| | || ||||||||||||||||  |||||  ||| |||||||||||    
T  27896603 tatataaatacaaacacaatcctagatcatttcactccggtccaaacgacaaatgtcattgtcagacgacactttcatgggttctctctcaa 27896694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 45380193 - 45380102
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||  |||||   |  ||||||||||||||||||||| | |||||||||||||||    
T  45380193 gggtttttcccgatttcaaaatacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacctaaactcgtcccaaatgt 45380102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 10072552 - 10072461
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  |||||||||| ||||||||||||  |||||   |  |||||||||||||||||||||||||  ||||||||||||    
T  10072552 gggttttccccgatttcaaaacacgggtatggaacgggtaacggg--tatat---aggtacccaccccgaacccatacccataaccgtcccaaatgt 10072461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 33841162 - 33841073
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||  ||||||||||||||||||||  ||||||     || ||| |||||||||||||||| ||||| ||||||||||||    
T  33841162 gttttccccgatttcaaaacacgggtatgggacgggtaacatggttat-----atgtactcaccccgaacccatactcatacccgtcccaaatgt 33841073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 281 - 375
Target Start/End: Complemental strand, 12980462 - 12980373
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    |||||||||||||||||||  ||||||||||||||||||| |||  |||||   |  ||||||||||||||||||||||| || |||||||||||    
T  12980462 ggttttccccgatttcaaaacacgggtatgggacgggtaatggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatg 12980373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 16866255 - 16866164
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||| ||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  16866255 gggttttccccgatctcaaaacacgggtatgggacgagtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 16866164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 280 - 374
Target Start/End: Original strand, 18825879 - 18825968
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaat 374  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||||||||||| |||||| || | ||||||||    
T  18825879 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccgtacccaaacccatcccaaat 18825968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 3226953 - 3227044
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  |||||||||||||||||||| ||  |||     |  |||||||||||||||||||| ||||| | ||||||||||    
T  3226953 gggttttccccgatttcaaaacacgggtatgggacgggtaacaggaatat-----aggtacccaccccgaacccatactcatacacatcccaaatgt 3227044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 18684061 - 18684009
Alignment:
Q  279 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    ||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  18684061 cgggttttccccgatttcaaaatacgggtacgggacgggtaacagggatatat 18684009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 27850333 - 27850377
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  27850333 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 27850377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 17885551 - 17885460
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||||| |||  | |||||||||||||||||||||  |||||   |  | || ||||||||||||||||||||| ||||||||||||    
T  17885551 gggttttccccgattttaaaacatgggtatgggacgggtaacggg--tatat---aggttccaaccccgaacccatacccatacccgtcccaaatgt 17885460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 21702745 - 21702654
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||  || ||||||||||||    
T  21702745 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccataccccaacccgtcccaaatgt 21702654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 31426094 - 31426043
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||||||||||| ||| |||||||||| |||||||||||||| |||||    
T  31426094 gggttttccccgatttaaaaatacgggtatgagacgggtaacggggatatat 31426043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 35074556 - 35074465
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| | |||  |||||||||||||||||||||||  |||||   |  |||||| |||||||||||||||| || ||||||||||||    
T  35074556 gggttttccccgatcttaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaacccgaacccatacccaaacccgtcccaaatgt 35074465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 39456022 - 39456112
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  | |||||||||||||||||||||  |||||   |  ||||||||||||| |||||| ||||| ||||||||||||    
T  39456022 gggttttccccgatttcaaaacatgggtatgggacgggtaacggg--tatat---aggtacccaccccgaa-ccatactcatacccgtcccaaatgt 39456112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 42908048 - 42908099
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||||||||||||||| |||||||| ||||||||||| |||| |||||    
T  42908048 gggttttccccgatttcaaaatacgggtacgggacgggtaatggggatatat 42908099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 43507531 - 43507440
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  | ||||||| |||||||||||||    ||| ||  | |||||||| ||||||||||| |||||||||||||||||    
T  43507531 gggttttccccgatttcaaaacatgggtatgagacgggtaacggg----tatataggc-acccaccctgaacccatacctatactcgtcccaaatgt 43507440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 8906704 - 8906742
Alignment:
Q  394 acccctttttatataaatagaaacacaaccctagatcat 432  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  8906704 acccctttttatataaatagaaacacaaccttagatcat 8906742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 3157168 - 3157119
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 330  Q
    ||||||||||||||||||| || ||||||||||||| |||||||| ||||    
T  3157168 ggttttccccgatttcaaaatatgggtatgggacggataacggggatata 3157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 360
Target Start/End: Complemental strand, 32546275 - 32546203
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    |||| |||||||||||| |||||||| || ||||||||||||| |||     || |||||||||||||||||||||||    
T  32546275 tttttcccgatttcaaaatacgggtacggaacgggtaacggggatat-----atgtacccaccccgaacccataccca 32546203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 357
Target Start/End: Original strand, 29014961 - 29015037
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatcta-atctacccaccccgaacccatac 357  Q
    ||||| |||||||||||| |||||||| ||||||| || ||||| ||||| || || || |||||||||||||||||    
T  29014961 gtttttcccgatttcaaaatacgggtacgggacggatagcggggatatatatatatatatccaccccgaacccatac 29015037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 41103742 - 41103698
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  ||||||||||||||| |||||||    
T  41103742 gggttttccccgatttcaaaacacgggtatgggacggttaacggg 41103698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 5377171 - 5377096
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    ||||||||||||||||||||  || |||||||||||||||| |||  |||||   |  |||||||||||||||||||||||    
T  5377171 gggttttccccgatttcaaaacacaggtatgggacgggtaaaggg--tatat---aggtacccaccccgaacccataccca 5377096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 22973474 - 22973399
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    ||||||||| |||||||||| |||||||| ||||||||||| ||||  |||||   | |||||||| ||||||||||||||    
T  22973474 gggttttccacgatttcaaaatacgggtacgggacgggtaatgggg--atatc---tgtacccacctcgaacccataccca 22973399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 8906503 - 8906565
Alignment:
Q  225 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 287  Q
    ||||||||||||||||||   | |||||||||||||| |||||  || |||||||||||||||    
T  8906503 catggcaacaatacccgtttccatgggtacccgcccaaacccactccgatttgacgggttttc 8906565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 17885648 - 17885578
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||| ||||  ||| | |||||||||||||||||||||||    
T  17885648 taggcatggcaacaaaacccatacccgtggttacctgcccgaaccaaacccaatttgacgggttttccccg 17885578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 370
Target Start/End: Original strand, 27896482 - 27896567
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtccc 370  Q
    ||||||||||  ||||||||  | ||||||||||||||||||||||||||     ||  ||| ||||||||| ||||||||||| ||||||    
T  27896482 gggttttcccttatttcaaaacatgggtatgggacgggtaacggggttat-----atgcaccaaccccgaactcatacccatacccgtccc 27896567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 35074653 - 35074583
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||| |||||||||||||||    
T  35074653 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaattagacgggttttccccg 35074583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 10072648 - 10072579
Alignment:
Q  222 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||||||||| |||| | | || || |||||||||  ||| | |||||||||||||||||||||||    
T  10072648 aggcatggcaacaaaacccatacccgcggttacccgcccgaaccaaacccaatttgacgggttttccccg 10072579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 10990871 - 10990908
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaa 320  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  10990871 ttttccccgatttcaaaatacgggtacgggacgggtaa 10990908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 331
Target Start/End: Original strand, 30839143 - 30839192
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||| ||||||||| ||||||||||||||| |||||| || |||||    
T  30839143 gttttccctgatttcaaaatacgggtatgggacgagtaacgtggatatat 30839192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 16079099 - 16079055
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||| ||||| |||||  |||||||||||||||||||||||    
T  16079099 gggttttctccgatctcaaaacacgggtatgggacgggtaacggg 16079055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 28309578 - 28309534
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||| |||| ||||||||| |||||||| |||||||||||||||    
T  28309578 gggttctccctgatttcaaaatacgggtacgggacgggtaacggg 28309534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 41741457 - 41741501
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  ||||||||| ||||| |||||||    
T  41741457 gggttttccccgatttcaaaacacgggtatgagacggataacggg 41741501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 221 - 289
Target Start/End: Original strand, 44734269 - 44734337
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccc 289  Q
    ||||||||||||||| || | | |||| || |||||||||  ||| | |||||||||||||||||||||    
T  44734269 taggcatggcaacaaaactcatactcgcggttacccgcccgaaccaaacccaatttgacgggttttccc 44734337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 150; Significance: 5e-79; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 281 - 556
Target Start/End: Complemental strand, 10302170 - 10301900
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnnn 380  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||     |||||||||||||||||||||||  ||||||||||||        
T  10302170 ggttttccccgatttcaaagtacgggtatgagacgggtaacggggttatatgta-----cccaccccgaacccatacccatatccgtcccaaatgtaaaa 10302076  T
Q  381 nnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgt-cattgtcagacggtacttttc 479  Q
       |||       ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| |||||||    
T  10302075 aa-ttacttttttaccaccttttatataaatagaaacacaaccctagatcatttcactccggtccaaaagggagatgttcattgtcagacggcacttttc 10301977  T
Q  480 tggattctctctcaagcagtcaacgctgctcacaaagctggtaattcaatattggttttctaggttcatttcattca 556  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||| |||||||||||||||    
T  10301976 tggattctctctcaagcagttaacgctgctcacaaagctggtaattcaatattgaatttctgggttcatttcattca 10301900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 222 - 291
Target Start/End: Complemental strand, 10302267 - 10302198
Alignment:
Q  222 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||||||||| | ||||||||||||||||||||||  || |||||| ||||||||||||    
T  10302267 aggcatggcaacaatacccgttcccgtgggtacccgcccatacccactccgatttgatgggttttccccg 10302198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 29527899 - 29527824
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    |||||||||||||||||||| |||||||| | |||||||||||||| |||     || |||||||||||||||||||||||    
T  29527899 gggttttccccgatttcaaaatacgggtacgtgacgggtaacggggatat-----atgtacccaccccgaacccataccca 29527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 414 - 470
Target Start/End: Complemental strand, 45275418 - 45275362
Alignment:
Q  414 aaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacg 470  Q
    ||||||||||||||||||||||||||| ||||||| | || ||||||||||||||||    
T  45275418 aaacacaaccctagatcatttcactccggtccaaacgacaaatgtcattgtcagacg 45275362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 5902622 - 5902713
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  5902622 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 5902713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 6382280 - 6382371
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||| ||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  6382280 gggttttctccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 6382371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 7609057 - 7608966
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  7609057 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 7608966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 43309570 - 43309519
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    ||||||| ||||||||||||  ||||||||||||||||||||||||||||||    
T  43309570 gggtttttcccgatttcaaaacacgggtatgggacgggtaacggggttatat 43309519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 44317622 - 44317531
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44317622 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 44317531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 1724318 - 1724408
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    ||||||||||||||||||||  | ||||||||||||||||||  ||||||||   |  ||||||||||||||||||||||| || |||||| ||||    
T  1724318 gggttttccccgatttcaaaacatgggtatgggacgggtaac--ggttatat---aggtacccaccccgaacccatacccaaacccgtcccgaatg 1724408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 3737758 - 3737720
Alignment:
Q  394 acccctttttatataaatagaaacacaaccctagatcat 432  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3737758 acccctttttatataaatagaaacacaaccctagatcat 3737720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 47550363 - 47550452
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  47550363 gttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 47550452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 32596192 - 32596236
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  32596192 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 32596236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 11028160 - 11028069
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  |||||||||||||| |||||||| ||  |||||||||||    
T  11028160 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaactcatacccaaacctgtcccaaatgt 11028069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 323
Target Start/End: Original strand, 12825469 - 12825512
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacgg 323  Q
    ||||||||||||||||||||  ||||||||||||||||||||||    
T  12825469 gggttttccccgatttcaaaacacgggtatgggacgggtaacgg 12825512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 31752543 - 31752452
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  ||||||||| |||| |||||| |  |||||   |  | |||||||||||||||||||||||| ||||||||||||    
T  31752543 gggttttccccgatttcaaaacacgggtatgagacgagtaacgag--tatat---aggttcccaccccgaacccatacccatacccgtcccaaatgt 31752452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 48459568 - 48459477
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  | |||||||| ||||||||| ||  |||||   |  |||||||||||||||||||||||||| | ||||||||||    
T  48459568 gggttttccccgatttcaaaacatgggtatggaacgggtaacagg--tatat---aggtacccaccccgaacccatacccatacccatcccaaatgt 48459477  T

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Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 6482043 - 6482133
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    ||||||||||| |||| |||  |||||||||||||| |||| |||  |||||   || ||||||||||||||||||||||| || |||||||||||    
T  6482043 gggttttccccaatttaaaaacacgggtatgggacgagtaaaggg--tatat---atgtacccaccccgaacccatacccaaacccgtcccaaatg 6482133  T

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Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 375
Target Start/End: Complemental strand, 26564914 - 26564828
Alignment:
Q  284 tttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    ||||||||||||||||   ||||||||||||||||||||||  |||||   |  ||||||||||||| ||||||||| || |||||||||||    
T  26564914 tttccccgatttcaaaacgcgggtatgggacgggtaacggg--tatat---aggtacccaccccgaaaccatacccaaacccgtcccaaatg 26564828  T

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Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 45065433 - 45065359
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||| |||||||| ||||||||| ||||    
T  45065433 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccgatttgacgagttttccccaattt 45065359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 219 - 331
Target Start/End: Complemental strand, 31782768 - 31782649
Alignment:
Q  219 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgac-------gggttttccccgatttcaaagtacgggtatgg 311  Q
    ||||||||||||||||| | |||| | | |||||||||||||| ||| | | | |||||||       |||||||||||||||||||| |||||||| ||    
T  31782768 cttaggcatggcaacaaaatccgtgcccatgggtacccgcccaaaccaacctcgatttgactgggtttgggttttccccgatttcaaaatacgggtacgg 31782669  T
Q  312 gacgggtaacggggttatat 331  Q
     || |||||||||| |||||    
T  31782668 tacaggtaacggggatatat 31782649  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 39375362 - 39375321
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  39375362 ttttccccgatttcaaaatacgggtataggacgggtaacggg 39375321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 37349298 - 37349226
Alignment:
Q  219 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||||||| |||||||||||    
T  37349298 cttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacaggttttccccg 37349226  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 1866459 - 1866534
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||| | |||||| |||||| | ||||||||| |||||| ||| | ||| ||||||||| |||||||||||||    
T  1866459 ttaggcaagacaacaaaacccgtgcacgtgggtactcgcccaaaccaaccccgatttgacggattttccccgattt 1866534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 359
Target Start/End: Complemental strand, 3737863 - 3737789
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccc 359  Q
    ||||||| ||| ||||||||  ||||||||||||||||||||| ||||||     || |||||| |||||||||||||||    
T  3737863 gggtttttcccaatttcaaaacacgggtatgggacgggtaacgaggttat-----atgtacccatcccgaacccataccc 3737789  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 374
Target Start/End: Original strand, 15987272 - 15987359
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaat 374  Q
    |||||||| ||||| |||  |||||||||||| ||||||||||  |||||  |   ||||||||||||||||||||||| || ||||||||||    
T  15987272 gttttcccagattttaaaacacgggtatgggatgggtaacggg--tatataga---tacccaccccgaacccatacccaaacccgtcccaaat 15987359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 31918566 - 31918657
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||| |||| |||    ||| || | ||||||||||||||||||||||| || ||||||||||||    
T  31918566 gggttttccccgatctcgaaacacgggtatgggacgagtaatggg----tatatagt-tacccaccccgaacccatacccaaacccgtcccaaatgt 31918657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 41915004 - 41915055
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||||||||||||||| || ||||| |||| ||||||||||| |||||    
T  41915004 gggttttccccgatttcaaaatatgggtacgggaagggtaacggggatatat 41915055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 10574370 - 10574416
Alignment:
Q  249 gggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||||||||| | | ||||| |||||||||||||||||||||||    
T  10574370 gggtacccgcccaaatcaatcccgatttgacgggttttccccgattt 10574416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 394 - 432
Target Start/End: Complemental strand, 43309464 - 43309426
Alignment:
Q  394 acccctttttatataaatagaaacacaaccctagatcat 432  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  43309464 acccatttttatataaatagaaacacaacccaagatcat 43309426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 43893411 - 43893341
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||||||||   || | |||||||||||||||||||||||    
T  43893411 taggcatggcaacaaaacccatacccgtggttacccgcccgagccaaacccaatttgacgggttttccccg 43893341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 10574430 - 10574478
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    ||||||||||||||| | ||| |||| |||||||||||||||| |||||    
T  10574430 ttttccccgatttcataatacaggtacgggacgggtaacggggatatat 10574478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 11173060 - 11173020
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaa 320  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  11173060 gggttttccccgatttcaaaatacgggtacgggacaggtaa 11173020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 394 - 501
Target Start/End: Complemental strand, 10212380 - 10212273
Alignment:
Q  394 acccctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctca 493  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||  | |||||||||||||| |||  | ||| |||| ||||||||||    
T  10212380 acccctttttatataaatacaaacacaaccctatatcatttcactctagtccaaacagaagatgtcattgtcacacgacattttgctgggttctctctca 10212281  T
Q  494 agcagtca 501  Q
    ||||||||    
T  10212280 agcagtca 10212273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 225 - 288
Target Start/End: Complemental strand, 22900969 - 22900906
Alignment:
Q  225 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcc 288  Q
    |||||||||||||||||||||| |||||||||||||  ||||||||| ||||||||||||||||    
T  22900969 catggcaacaatacccgtcctcatgggtacccgccctaacccatcccgatttgacgggttttcc 22900906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 280 - 432
Target Start/End: Complemental strand, 22900876 - 22900729
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 379  Q
    ||||||| ||||||||||||  |||||||||||||| |||||||||||||     || |||||||||||||| ||||||||||| ||||||||| ||       
T  22900876 gggtttttcccgatttcaaaacacgggtatgggacgagtaacggggttat-----atatacccaccccgaactcatacccatacccgtcccaaacgtaaa 22900782  T
Q  380 nnnnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 432  Q
        |         ||||||||||| |||||||||||||||||||||||||||    
T  22900781 aaattattttttttacccctttttacataaatagaaacacaaccctagatcat 22900729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 15546826 - 15546735
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  ||||||||||||||||||||  ||||||     || ||||||||| |||||||||||||||| | ||||||||||    
T  15546826 gggttttccccgatttcaaaacacgggtatgggacgggtaacatggttat-----atatacccaccctgaacccatacccatacccttcccaaatgt 15546735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 7314655 - 7314746
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||||| ||| |||| |||||||||||||||||||  |||||   |  | ||||||||||||||||||||| || ||||||||||||    
T  7314655 gggttttccccgattttaaaatacgagtatgggacgggtaacggg--tatat---aggttcccaccccgaacccatacccacacccgtcccaaatgt 7314746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 281 - 376
Target Start/End: Original strand, 24414140 - 24414230
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  24414140 ggttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 24414230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 10212585 - 10212520
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggtttt 286  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||| ||| |||||||| |||||    
T  10212585 taggcatgacaacaatacccgtacctgtgggtacccgcccatacccaccccgatttgacgagtttt 10212520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 37106774 - 37106730
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  37106774 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 37106730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 372
Target Start/End: Complemental strand, 30847028 - 30846941
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaa 372  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||    
T  30847028 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaa 30846941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 30847126 - 30847055
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  30847126 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 30847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 37999565 - 37999474
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  ||||||||| |||||||||||||  |||||   |  |||||||||||||| |||||||| || ||||||||||||    
T  37999565 gggttttccccgatctcaaaacacgggtatgagacgggtaacggg--tatat---aagtacccaccccgaactcatacccaaacccgtcccaaatgt 37999474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 291
Target Start/End: Complemental strand, 15546919 - 15546853
Alignment:
Q  225 catggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||||||||||| ||| | |||||||||||||| || || ||| |||||||| ||||||||||    
T  15546919 catggcaacaatacccatccccatgggtacccgcccaaactcacccccatttgacgagttttccccg 15546853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 38342528 - 38342601
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    |||||||||||||| ||| ||||| || |||||||||||||||| |||     || |||||||||||||||||||||||    
T  38342528 gttttccccgattttaaaatacggatacgggacgggtaacggggatat-----atgtacccaccccgaacccataccca 38342601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 399 - 432
Target Start/End: Complemental strand, 15546709 - 15546676
Alignment:
Q  399 tttttatataaatagaaacacaaccctagatcat 432  Q
    ||||||||||||||||||||||||||||||||||    
T  15546709 tttttatataaatagaaacacaaccctagatcat 15546676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 37472769 - 37472810
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||||||||||||  |||||||||||||||||||||||    
T  37472769 ttttccccgatttcaaaacacgggtatgggacgggtaacggg 37472810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 39256370 - 39256431
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacggg 282  Q
    ||||||||||||||| |||||| | | |||||||||||||| ||| | ||||||||||||||    
T  39256370 taggcatggcaacaaaacccgtgcccatgggtacccgcccaaaccaaccccaatttgacggg 39256431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 331
Target Start/End: Complemental strand, 43371633 - 43371584
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||||||||| ||| |||||||| |||||||||||||||| |||||    
T  43371633 gttttccccgattttaaaatacgggtacgggacgggtaacggggatatat 43371584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 360
Target Start/End: Complemental strand, 14331609 - 14331534
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    ||||||||||| |||| ||| ||| ||||||||||||||||||||| |||     || ||||||| |||||||||||||||    
T  14331609 gggttttcccctatttaaaaatacaggtatgggacgggtaacggggatat-----atgtacccactccgaacccataccca 14331534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 6027811 - 6027881
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||| |||||| |||| | ||||||| || ||||||  ||| | |||||||||||||||||||||||    
T  6027811 taggcatgacaacaaaacccatactcgtggttatccgcccgaaccaaacccaatttgacgggttttccccg 6027881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 26755919 - 26755845
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    |||||||| |||||| |||||| | | |||||||| ||||| ||| | ||| |||||||||||||| ||||||||    
T  26755919 taggcatgacaacaaaacccgtgcccatgggtacctgcccaaaccaaccccgatttgacgggtttttcccgattt 26755845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 6e-23; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 394 - 516
Target Start/End: Complemental strand, 38686641 - 38686514
Alignment:
Q  394 acccctttttatataaatagaaacacaaccctagat-----catttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctc 488  Q
    |||||||| |||||||||| ||| ||||||||||||     |||||||||||||| |||| || |||||||| |||||||||  |||||||||| |||||    
T  38686641 acccctttctatataaatacaaagacaaccctagattatttcatttcactccagttcaaatggaagatgtcactgtcagacgacacttttctgggttctc 38686542  T
Q  489 tctcaagcagtcaacgctgctcacaaag 516  Q
    |||||||||||||||   ||||||||||    
T  38686541 tctcaagcagtcaacatcgctcacaaag 38686514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 282 - 432
Target Start/End: Original strand, 10778576 - 10778721
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnnnn 381  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||  ||      ||||||||||||||||| ||||| |||| |||||||         
T  10778576 gtttttcccgatttcaaaacacgggtatgggacgggtaacggggttatagatat-----ccaccccgaacccatactcatacccgtctcaaatgtaaaaa 10778670  T
Q  382 nnttannnnnnnacccctttttatataaatagaaacacaaccctagatcat 432  Q
       ||       |||||||||||||||||||||||||||||||||||||||    
T  10778671 aaatatttttttacccctttttatataaatagaaacacaaccctagatcat 10778721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 29936498 - 29936407
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  29936498 gggttttccccgatctcaaaatacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 29936407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 280 - 430
Target Start/End: Complemental strand, 34085317 - 34085170
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 379  Q
    ||||||| ||||||||||||  ||| |||||||| ||||||||||||||||| ||     |||||||||||||||||||||||||||||| ||||||       
T  34085317 gggtttttcccgatttcaaaacacgagtatgggatgggtaacggggttatatgta-----cccaccccgaacccatacccatactcgtcctaaatgtaaa 34085223  T
Q  380 nnnnt--tannnnnnnacccctttttatataaatagaaacacaaccctagatc 430  Q
        |  |        |||||||||||||||||||||||||||||||||||||    
T  34085222 aaattattttttttttacccctttttatataaatagaaacacaaccctagatc 34085170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 18354087 - 18354178
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  | |||||||||||||||||||||  |||||   |  | ||||||||||||| |||||||||||||||||||||||    
T  18354087 gggttttccccgatttcaaaacatgggtatgggacgggtaacggg--tatat---aagttcccaccccgaaccgatacccatactcgtcccaaatgt 18354178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 5181121 - 5181077
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||||||||||||||| ||||||||||||||||||||||||    
T  5181121 gggttttccccgatttcaaaatacgggtatgggacgggtaacggg 5181077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 17135029 - 17134938
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||  |||||   |  ||||  |||||||||||||||||||||||||||| ||||    
T  17135029 gggttttccccgatttcaaaacacgggtatgagacgggtaacggg--tatat---aggtaccatccccgaacccatacccatactcgtcccatatgt 17134938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 19003575 - 19003650
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    |||||||||||||||| |||||| | | |||||||||||||| | | | ||| |||||||||||||||||||||||    
T  19003575 ttaggcatggcaacaaaacccgtgcccatgggtacccgcccaaagcaaccccgatttgacgggttttccccgattt 19003650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 19572519 - 19572610
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||| ||||||||||||  ||||||||||||| |||||||||  |||||   |  |||||||||||||||||||| ||||| ||||||||||||    
T  19572519 gggtttttcccgatttcaaaacacgggtatgggacaggtaacggg--tatat---aggtacccaccccgaacccatactcatacccgtcccaaatgt 19572610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 36187227 - 36187318
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||| ||||||||||||| || ||||||||||||    
T  36187227 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccctgaacccatacccaaacccgtcccaaatgt 36187318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 28298014 - 28297925
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  28298014 gttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 28297925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 331
Target Start/End: Original strand, 19003672 - 19003724
Alignment:
Q  279 cgggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||||||||||| |||| |||||||||||||||| |||||||| |||||    
T  19003672 cgggttttccccgattacaaaatacgggtatgggacggataacggggatatat 19003724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 3627993 - 3628036
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||||||||||||||  |||||||||||||||||||||||    
T  3627993 ggttttccccgatttcaaaacacgggtatgggacgggtaacggg 3628036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 16237311 - 16237362
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatat 331  Q
    |||||||||||||||||||| |||||||| ||||||||||||| || |||||    
T  16237311 gggttttccccgatttcaaaatacgggtaagggacgggtaacgaggatatat 16237362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 23490778 - 23490869
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||| | || ||||||||||||    
T  23490778 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccataccaaaacccgtcccaaatgt 23490869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 51421940 - 51421849
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||| |||||| |||||  ||||||||||||||||||||  |  |||||   || ||||||||||||||||||||||| || ||||||||||||    
T  51421940 gggtttttcccgatctcaaaacacgggtatgggacgggtaacatg--tatat---atgtacccaccccgaacccatacccaaacccgtcccaaatgt 51421849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 20774745 - 20774675
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | ||||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  20774745 taggcatggcaacaaaacccatactcgtggttacccgcccgaaccaaacccaatttgacggattttccccg 20774675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 38686829 - 38686763
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 287  Q
    |||||||| |||||||||  || | |||||||||||||| ||||||||||| |||| ||||||||||    
T  38686829 taggcatgacaacaatacatgtacccgtgggtacccgcctatacccatcccgattttacgggttttc 38686763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 321
Target Start/End: Original strand, 44632139 - 44632189
Alignment:
Q  271 caatttgacgggttttccccgatttcaaagtacgggtatgggacgggtaac 321  Q
    ||||||||| ||||||| |||||||||||  ||||||||||||||||||||    
T  44632139 caatttgactggttttctccgatttcaaaacacgggtatgggacgggtaac 44632189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 24710929 - 24710885
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  24710929 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 24710885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 295
Target Start/End: Original strand, 10450014 - 10450061
Alignment:
Q  248 tgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    |||||||||||||| ||| | |||||||||||||||||||||| ||||    
T  10450014 tgggtacccgcccaaaccaaccccaatttgacgggttttccccaattt 10450061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 13390442 - 13390404
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| ||||||||||| ||||||||||||    
T  13390442 tacccaccccgaactcatacccatacccgtcccaaatgt 13390404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 23966902 - 23966864
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||||||||| ||||| ||||||||||||    
T  23966902 tacccaccccgaacccatactcatacccgtcccaaatgt 23966864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 29936601 - 29936531
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||| |||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  29936601 taggcatgacaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 29936531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 33293538 - 33293588
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 330  Q
    ||||||| ||||||||||||  ||||||||||||||||||| |||| ||||    
T  33293538 gggtttttcccgatttcaaaacacgggtatgggacgggtaatggggatata 33293588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 324
Target Start/End: Original strand, 42707846 - 42707888
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||| |||||||||||  |||||||||||||||||||||||    
T  42707846 gttttctccgatttcaaaacacgggtatgggacgggtaacggg 42707888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 16409024 - 16408983
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaac 321  Q
    ||||||||||| ||||||||  ||||||||||||||||||||    
T  16409024 gggttttccccaatttcaaaacacgggtatgggacgggtaac 16408983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 323
Target Start/End: Original strand, 16433176 - 16433217
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacgg 323  Q
    |||||| |||||||||||  ||||||||||||||||||||||    
T  16433176 gttttctccgatttcaaaacacgggtatgggacgggtaacgg 16433217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 23968661 - 23968621
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaa 320  Q
    |||||||||||| |||||||  |||||||||||||||||||    
T  23968661 gggttttccccggtttcaaaacacgggtatgggacgggtaa 23968621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 35936836 - 35936880
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  ||| ||||||||||| |||||||    
T  35936836 gggttttccccgatttcaaatcacgagtatgggacggataacggg 35936880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 295
Target Start/End: Complemental strand, 37032492 - 37032416
Alignment:
Q  219 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||||||||||||| |||||| ||| ||| || ||||| | ||| ||||  |||||||||||||| || |||||    
T  37032492 cttaggcatggcaacaaaacccgtgctcatggatatccgccgaaaccaatcctgatttgacgggtttttcctgattt 37032416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 249 - 285
Target Start/End: Complemental strand, 39219397 - 39219361
Alignment:
Q  249 gggtacccgcccatacccatcccaatttgacgggttt 285  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  39219397 gggtacccgcccaaaccaatcccaatttgacgggttt 39219361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 439
Target Start/End: Original strand, 45460157 - 45460204
Alignment:
Q  394 acccctttttatataaatagaaacacaa--ccctagatcatttcactc 439  Q
    ||||||||||||||||||||||||| ||  ||||| ||||||||||||    
T  45460157 acccctttttatataaatagaaacataaacccctaaatcatttcactc 45460204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 397 - 501
Target Start/End: Original strand, 10043401 - 10043505
Alignment:
Q  397 cctttttatataaatagaaacacaaccctagatcatttcactccagtccaaaaggcagatgtcattgtcagacggtacttttctggattctctctcaagc 496  Q
    |||||||||||||||| |||||||| |||||||||||||||||  |||| || | || ||||||||||||||||  |||||| ||| || ||||||||||    
T  10043401 cctttttatataaatacaaacacaaacctagatcatttcactctggtccgaacgacaaatgtcattgtcagacgacacttttatgggttttctctcaagc 10043500  T
Q  497 agtca 501  Q
    |||||    
T  10043501 agtca 10043505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 280 - 432
Target Start/End: Original strand, 30616288 - 30616437
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgtnnn 379  Q
    ||||||||||||||||||||  |||| |||||||||||||||| |||||||| |||     ||||||||||||||||||||||| ||||||||| ||       
T  30616288 gggttttccccgatttcaaaacacggatatgggacgggtaacgaggttatatataa-----ccaccccgaacccatacccatacccgtcccaaacgtaaa 30616382  T
Q  380 nnnnt--tannnnnnnacccctttttatataaatagaaacacaaccctagatcat 432  Q
        |  |        |||||||||||||||||||||||||||||||||||||||    
T  30616383 aaattattttttttttacccctttttatataaatagaaacacaaccctagatcat 30616437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 23546949 - 23547040
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| |||||||||||||||    
T  23546949 gggttttccccgatctcgaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaactcgtcccaaatgt 23547040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 44172707 - 44172616
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44172707 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatgt 44172616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 44179407 - 44179316
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  44179407 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatgt 44179316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 281 - 376
Target Start/End: Complemental strand, 39728751 - 39728661
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||| |||| ||||| ||||||||||||| ||||||||||    ||| |||  ||||||||||||||||||||||| || ||||||||||||    
T  39728751 ggttttcctcgatctcaaaatacgggtatgggatgggtaacggg----tatataag-tacccaccccgaacccatacccaaacccgtcccaaatgt 39728661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 48390824 - 48390868
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  |||||||||||||||||||||||    
T  48390824 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg 48390868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 10043289 - 10043367
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatac 363  Q
    |||||||||| | |||||||  | ||||||||||||||||||||||||||     ||  |||||||||||||||||||||||||    
T  10043289 gggttttccctggtttcaaaacatgggtatgggacgggtaacggggttat-----atgcacccaccccgaacccatacccatac 10043367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 39655182 - 39655253
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  39655182 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 39655253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Original strand, 4016051 - 4016141
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    ||||||||||||||||||||  | ||||||||||||| |||||||  |||||   |  ||||||| ||||||||||||||| ||||||||| ||||    
T  4016051 gggttttccccgatttcaaaacatgggtatgggacggataacggg--tatat---aggtacccactccgaacccatacccaaactcgtcccgaatg 4016141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 7469688 - 7469758
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  7469688 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 7469758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 34154442 - 34154404
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  34154442 tacccaccccgaacccatacccatacccgtcccaaatgt 34154404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 44953442 - 44953486
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  44953442 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 44953486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 295
Target Start/End: Original strand, 1772308 - 1772383
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    |||||||||||||||| ||  || | | |||||||| ||||| ||| ||||| ||||||||| |||||||||||||    
T  1772308 ttaggcatggcaacaaaacatgtgcccatgggtacctgcccaaaccaatcccgatttgacggattttccccgattt 1772383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 287
Target Start/End: Original strand, 10043195 - 10043258
Alignment:
Q  224 gcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 287  Q
    ||||| ||||||||| |||   |||||||||||| ||||||| | |||||||||||||||||||    
T  10043195 gcatgacaacaatactcgtatccgtgggtacccgaccataccaaccccaatttgacgggttttc 10043258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 34026035 - 34025944
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  || |||||||||||||||||| |  |||||   |  |  ||||||||||| ||||||||||| ||||||||||||    
T  34026035 gggttttccccgatttcaaaacacaggtatgggacgggtaacgag--tatat---aggtttccaccccgaactcatacccatacccgtcccaaatgt 34025944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 39655280 - 39655371
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||||||||| ||  |||||   |  |||||||||| |||||||||||| || |||| |||||||    
T  39655280 gggttttccccgatctcaaaacacgggtatgggacgggtaacagg--tatat---aggtacccaccccaaacccatacccaaacccgtctcaaatgt 39655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 49580145 - 49580054
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  ||||||||||||||||||||| |  |||||   |  |||||||| ||||||||||| || || ||||||||||||    
T  49580145 gggttttccccgatctcaaaacacgggtatgggacgggtaacgag--tatat---aggtacccacctcgaacccatactcaaacccgtcccaaatgt 49580054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Original strand, 22535902 - 22535939
Alignment:
Q  339 acccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||| ||||||||||| ||||||    
T  22535902 acccaccccgaacccatacacatactcgtcctaaatgt 22535939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 374
Target Start/End: Complemental strand, 44252828 - 44252739
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaat 374  Q
    |||||||||||||| || ||  |||||||||||||| ||||| ||  |||||   |  ||||||||||||||||||||||| || ||||||||||    
T  44252828 gggttttccccgatctcgaaacacgggtatgggacgtgtaacagg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaat 44252739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 49025761 - 49025720
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaac 321  Q
    |||||||||||||| |||||  ||||||||||||||||||||    
T  49025761 gggttttccccgatctcaaaacacgggtatgggacgggtaac 49025720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 43582656 - 43582616
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacg 322  Q
    ||||||||||||||||||  ||||||||| |||||||||||    
T  43582656 gttttccccgatttcaaaacacgggtatgagacgggtaacg 43582616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 33474 - 33384
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   || ||||||||||||||||||||||| ||||||||| ||||    
T  33474 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---atgtacccaccccgaacccatacccaaactcgtcccgaatg 33384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 5863390 - 5863481
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  |||||||| |||||||||||||| || ||||||||||||    
T  5863390 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---agatacccacctcgaacccatacccaaacccgtcccaaatgt 5863481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 27738853 - 27738762
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  ||||||||||||||||||||   | |||||   || ||||||||||||||||||||||| || ||||||||||||    
T  27738853 gggttttccccgatttcaaaacacgggtatgggacgggtaac--agatatat---atgtacccaccccgaacccatacccaaacccgtcccaaatgt 27738762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 32532621 - 32532530
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  ||||||||||||||||||| |||  |||||   |  |||||||||||||||||||| ||||| ||||||||||||    
T  32532621 gggttttccccgatttcaaaacacgggtatgggacgggtaatggg--tatat---aggtacccaccccgaacccatactcatacccgtcccaaatgt 32532530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 32853925 - 32853834
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  32853925 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 32853834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 2367407 - 2367317
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatg 375  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || |||||||||||    
T  2367407 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aagtacccaccccgaacccatacccaaacccgtcccaaatg 2367317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 3483930 - 3484021
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| || ||  |||||||||||| ||||||||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  3483930 gggttttccccgatctcgaaacacgggtatgggatgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 3484021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 32053169 - 32053078
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  | || ||||||||||||||||||  |||||   || |||||||||| |||||||||||| || ||||| ||||||    
T  32053169 gggttttccccgatttcaaaacatggatatgggacgggtaacggg--tatat---atgtacccaccccaaacccatacccaaacccgtccaaaatgt 32053078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 3483833 - 3483903
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | ||| ||| |||||||||  ||| | |||||||||||||||||||||||    
T  3483833 taggcatggcaacaaaacccatactcatggttacccgcccgaaccaaacccaatttgacgggttttccccg 3483903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 369
Target Start/End: Original strand, 14410864 - 14410946
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcc 369  Q
    |||||||| |||||||||  |||||||||||||||||||||||  |||||   |  ||||||||||||||||||||||| || |||||    
T  14410864 gttttcccagatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcc 14410946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 222 - 291
Target Start/End: Original strand, 10187991 - 10188060
Alignment:
Q  222 aggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||||||    
T  10187991 aggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttccccg 10188060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 18908974 - 18908933
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaac 321  Q
    |||||||||||||||||||| ||||| |||||||||||||||    
T  18908974 gggttttccccgatttcaaaatacggatatgggacgggtaac 18908933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 365
Target Start/End: Original strand, 29199895 - 29199972
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactc 365  Q
    ||||||||||||||||| |||||||| |||||||||||| ||| ||||| | ||||    |||||||||||||||||| ||||    
T  29199895 ttttccccgatttcaaaatacgggtacgggacgggtaacagggatatatgt-atct----accccgaacccatacccaaactc 29199972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 20610993 - 20611033
Alignment:
Q  284 tttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||||||||||| |||||||| |||||||||||||||    
T  20610993 tttccccgatttcaaaatacgggtaggggacgggtaacggg 20611033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 360
Target Start/End: Original strand, 28079703 - 28079778
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    ||||||||||||||||||||  | ||||| |||||||||||||||| |||     |  |||||||||||||||||||||||    
T  28079703 gggttttccccgatttcaaaacatgggtacgggacgggtaacggggatat-----aggtacccaccccgaacccataccca 28079778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 30986334 - 30986290
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    |||||||||||||| |||||  |||||||||||||||||||||||    
T  30986334 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg 30986290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 10142525 - 10142616
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  ||||||||||||| |||||||||  |||||   |  |||||||||||||| |||||||| ||  |||||||||||    
T  10142525 gggttttccccgatctcaaaaaacgggtatgggacaggtaacggg--tatat---aggtacccaccccgaactcatacccaaacctgtcccaaatgt 10142616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 12141466 - 12141375
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||| || |||||  |||| |||||||||||| |||||  |||||   |  ||||||||||||||||||||||| || ||||||||||||    
T  12141466 gggttttccccaatctcaaaacacggatatgggacgggtgacggg--tatat---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 12141375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 330
Target Start/End: Complemental strand, 20349142 - 20349095
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 330  Q
    |||||||||||||||||  |||||||||||||| ||||||||| ||||    
T  20349142 ttttccccgatttcaaaacacgggtatgggacgagtaacggggatata 20349095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 291
Target Start/End: Complemental strand, 30986432 - 30986361
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    |||||||||||||||| |||| | | ||||| |||||||||  ||| | | |||||||||||||||||||||    
T  30986432 ttaggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaactcaatttgacgggttttccccg 30986361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 31496612 - 31496542
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||||| ||| ||| | | |||||||||||||||||||||    
T  31496612 taggcatggcaacaaaacccatacccgtggttacccgtccaaaccaaactcaatttgacgggttttccccg 31496542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 31501998 - 31501928
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||||| ||| ||| | | |||||||||||||||||||||    
T  31501998 taggcatggcaacaaaacccatacccgtggttacccgtccaaaccaaactcaatttgacgggttttccccg 31501928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Complemental strand, 14506167 - 14506126
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaac 321  Q
    ||||||||||||||||||||  || |||||||||||||||||    
T  14506167 gggttttccccgatttcaaaacacaggtatgggacgggtaac 14506126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 9442503 - 9442467
Alignment:
Q  288 cccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||  |||||||||||||||||||||||    
T  9442503 cccgatttcaaaacacgggtatgggacgggtaacggg 9442467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 4583200 - 4583109
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  |||||||||||||||||||||||  |||||   |  | |||||||| ||||||||||||||| ||||||||||||    
T  4583200 gggttttccccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggttcccaccccaaacccatacccatacccgtcccaaatgt 4583109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 4920907 - 4920816
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||||||| |||||  |||||||||||||||||||||||  |||||   |  || |||||||||||||||||||| || ||||||||||||    
T  4920907 gggttttccccgatctcaaaacacgggtatgggacgggtaacggg--tatat---aggtatccaccccgaacccatacccaaacccgtcccaaatgt 4920816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 219 - 290
Target Start/End: Original strand, 10822447 - 10822518
Alignment:
Q  219 cttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttcccc 290  Q
    ||||| ||||||||||||||| |||| | |||||||||||||| ||||| | | ||||||||||||||||||    
T  10822447 cttagacatggcaacaatacctgtccccatgggtacccgcccaaacccacctcgatttgacgggttttcccc 10822518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 359
Target Start/End: Original strand, 10822534 - 10822608
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccc 359  Q
    |||||||| |||||||||||  |||||||| |||||||||||||||||||     || ||||||||||||||||||||||    
T  10822534 gggttttctccgatttcaaaacacgggtataggacgggtaacggggttat-----atgtacccaccccgaacccataccc 10822608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Complemental strand, 15890287 - 15890197
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||| |||||||||||  |||||||||||||||||||||||  |||||   |  |||||| ||||||||||||||||||| ||||||||||||    
T  15890287 gggttttctccgatttcaaaacacgggtatgggacgggtaacggg--tatat---aggtaccca-cccgaacccatacccatacccgtcccaaatgt 15890197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 376
Target Start/End: Original strand, 17853301 - 17853391
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||  ||||||||||||||||||||  || |||||   |  ||||||| |||||||||||||||||| ||||||||||||    
T  17853301 gggttttccccgatttcaaac-acgggtatgggacgggtaac--ggatatat---agatacccactccgaacccatacccatacccgtcccaaatgt 17853391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 2681394 - 2681320
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||||||||||| || ||| | | |||||||||| ||| ||| | | |||||||||||||||||||||||||    
T  2681394 taggcatggcaacaaaactcgtgcccatgggtacccgtccaaaccaacctcaatttgacgggttttccccgattt 2681320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 432
Target Start/End: Original strand, 10822647 - 10822685
Alignment:
Q  394 acccctttttatataaatagaaacacaaccctagatcat 432  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  10822647 acccctttttatataaatagaaacacaaccttagatcat 10822685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 282 - 376
Target Start/End: Original strand, 12866561 - 12866650
Alignment:
Q  282 gttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||| |||||||||||  | |||||||||||||||||| ||  |||||   |  |||||||| ||||||||||||||||| ||||||||||||    
T  12866561 gttttctccgatttcaaaacatgggtatgggacgggtaacagg--tatat---aggtacccaccgcgaacccatacccatacccgtcccaaatgt 12866650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 281 - 358
Target Start/End: Original strand, 23045000 - 23045072
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacc 358  Q
    ||||||||||||||||||| |||||||| |||| ||||||||| | |||     || |||||||||||||||||||||    
T  23045000 ggttttccccgatttcaaaatacgggtacgggatgggtaacggagatat-----atgtacccaccccgaacccatacc 23045072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 283 - 360
Target Start/End: Original strand, 28569032 - 28569104
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccataccca 360  Q
    ||||||||||||||||| | |||||| |||||||||||||||| |||     |  |||||||||||||||||||||||    
T  28569032 ttttccccgatttcaaaatgcgggtacgggacgggtaacggggatat-----aggtacccaccccgaacccataccca 28569104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 376
Target Start/End: Original strand, 22694913 - 22695000
Alignment:
Q  284 tttccccgatttcaaagtacgggtatgggacgggtaacggggttatatctaatctacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||||||||| ||||| |||||||||||||||  |||||||  ||||    |  ||||||||||||||||||||||| || ||||||||||||    
T  22694913 tttccccgatctcaaaatacgggtatgggacgactaacggg--tatag---aggtacccaccccgaacccatacccaaacccgtcccaaatgt 22695000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 1218783 - 1218745
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  1218783 tacccactccgaacccatacccatacccgtcccaaatgt 1218745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 4921004 - 4920938
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttc 287  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | |||||||||||||||||||    
T  4921004 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacgggttttc 4920938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 376
Target Start/End: Complemental strand, 10127109 - 10127071
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  10127109 tacccaccccgaacccatacccaaacccgtcccaaatgt 10127071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 12834635 - 12834673
Alignment:
Q  338 tacccaccccgaacccatacccatactcgtcccaaatgt 376  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  12834635 tacctaccccgaacccatacccatacccgtcccaaatgt 12834673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 295
Target Start/End: Original strand, 23044898 - 23044976
Alignment:
Q  217 ttcttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    |||||||||||||||| || | |||| | | |||||||||||||| ||| | ||| |||||||||||||| ||| ||||    
T  23044898 ttcttaggcatggcaaaaaaatccgtgcacatgggtacccgcccaaaccaaccccgatttgacgggtttttcccaattt 23044976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 252 - 321
Target Start/End: Original strand, 27302714 - 27302784
Alignment:
Q  252 tacccgcccatacccatcccaatttgacggg-ttttccccgatttcaaagtacgggtatgggacgggtaac 321  Q
    |||||| ||| ||| |||||||||||||||| |||||||||||||||||  |||| |||| ||||| ||||    
T  27302714 tacccgtccaaaccaatcccaatttgacgggattttccccgatttcaaaacacggatatgagacggataac 27302784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 33727912 - 33727982
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccg 291  Q
    ||||||||||||||| |||| | | ||||| |||||||||  ||| | ||||||||||||| |||||||||    
T  33727912 taggcatggcaacaaaacccatacccgtggttacccgcccgaaccaaacccaatttgacggattttccccg 33727982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 33728012 - 33728053
Alignment:
Q  283 ttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||| |||||  |||||||||||||||||||||||    
T  33728012 ttttccccgatctcaaaacacgggtatgggacgggtaacggg 33728053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 321
Target Start/End: Original strand, 38006477 - 38006518
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaac 321  Q
    ||||||||||| |||||||| ||||||||||||||| |||||    
T  38006477 gggttttccccaatttcaaaatacgggtatgggacgcgtaac 38006518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 220 - 308
Target Start/End: Original strand, 18451833 - 18451921
Alignment:
Q  220 ttaggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgatttcaaagtacgggta 308  Q
    ||||||||| |||||| |||| | | ||||||| |||| ||  ||| | |||| |||||||||||||||||||||| ||| ||| ||||    
T  18451833 ttaggcatgacaacaaaacccatacacgtgggttcccgtccgaaccaaacccagtttgacgggttttccccgatttgaaaatacaggta 18451921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 67927 - 67853
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||||||||||| |||||| | | || ||||||||||| ||| | ||| ||||||| |||||||||||||||    
T  67927 taggcatggcaacaaaacccgtgcccatgagtacccgcccaaaccaaccccgatttgacaggttttccccgattt 67853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 75770 - 75696
Alignment:
Q  221 taggcatggcaacaatacccgtcctcgtgggtacccgcccatacccatcccaatttgacgggttttccccgattt 295  Q
    ||||||||||||||| |||||| | | || ||||||||||| ||| | ||| ||||||| |||||||||||||||    
T  75770 taggcatggcaacaaaacccgtgcccatgagtacccgcccaaaccaaccccgatttgacaggttttccccgattt 75696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 281 - 330
Target Start/End: Original strand, 4589 - 4638
Alignment:
Q  281 ggttttccccgatttcaaagtacgggtatgggacgggtaacggggttata 330  Q
    |||||||||| |||||||| |||||||||||||| |||||| ||| ||||    
T  4589 ggttttccccaatttcaaaatacgggtatgggacaggtaacagggatata 4638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 280 - 324
Target Start/End: Complemental strand, 90678 - 90634
Alignment:
Q  280 gggttttccccgatttcaaagtacgggtatgggacgggtaacggg 324  Q
    ||||||||||||||||||||  ||||||||| ||||| |||||||    
T  90678 gggttttccccgatttcaaaacacgggtatgagacggttaacggg 90634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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