View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_21 (Length: 367)
Name: NF15431_low_21
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 21 - 357
Target Start/End: Original strand, 2484437 - 2484775
Alignment:
| Q |
21 |
tactcccttattggaacttagtttcacatggacgatgaaagtactagttttgatgtttcagtttccatttaggcaacaaagaggtaactactaactagtt |
120 |
Q |
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| T |
2484437 |
tactcccttattgga-cttagtttcacatggacgatgaaagtactagttttgatgtttcagtttccatttaggcaacaaagaggtaactactaactagtt |
2484535 |
T |
|
| Q |
121 |
ttagtttcaacatgtttgcaaccaactaaatttagatgactcaacggccaatcaacctctagatcaatttttggcttactttagagcttccaaatccttt |
220 |
Q |
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| T |
2484536 |
ttagtttcaacatgtttgcaaccagctaaatttagatgactcaaaggccaaccaacctctagatcaatttttggcttactgtagagcttccaaatccttt |
2484635 |
T |
|
| Q |
221 |
tctatgcccaactttgtagccatattctaacatgaatcaactaacttattattttatgtgcccacattgcattcacagtgttcgctctattttctaaatg |
320 |
Q |
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| T |
2484636 |
tctatgcccaactttgtagccatattctaacatgaatcaactaacttattattttatgtccccacattgcattcgcagagttcgctctattttctaaatg |
2484735 |
T |
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| Q |
321 |
---tcatcattgtcctctttcttccgtacgattcctctct |
357 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2484736 |
tcatcatcattgtcctctttcttccgtacgattcctctct |
2484775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 7438372 - 7438019
Alignment:
| Q |
19 |
cctactcccttattggaacttagtttcacatggacgatgaaagtactagttttgatgtttcagtttccatttaggcaacaaagaggtaactactaactag |
118 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7438372 |
cctacacccttattggaacttagtttcacatggacgatgaaagtacttgttttgatgtttcagtttccatttaggcaacaaagaggttactactaactag |
7438273 |
T |
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| Q |
119 |
tttt----agtttcaacatgtttgcaaccaactaa----atttagatgactcaacggccaatcaacctctagatcaatttttggcttactttagagcttc |
210 |
Q |
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|||| | || ||||||||||||||||||||| | |||||||||||| |||||| |||||||||||||||||||| ||||||| | |||| || |
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| T |
7438272 |
ttttaaaaaattcaaacatgtttgcaaccaactaactatacttagatgactcagtggccaaccaacctctagatcaattttttgcttactgtggagcctc |
7438173 |
T |
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| Q |
211 |
caaatccttttctatgcccaactttgtagccatattctaacatgaatca----actaacttattattttatgtgcccacattgcattca-cagtgttcgc |
305 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| | | | ||||| |||| ||| ||| || |||||| | ||| ||| || |
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| T |
7438172 |
caaatccttttctatgtccaactttgtagccatattctaacatgaatcaccatagttatttattgttttctgttcccgcactgcatttagcagagtt-gc |
7438074 |
T |
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| Q |
306 |
tctattttctaaatg---tcatcattgtcctctttcttccgtacgattcctctct |
357 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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| T |
7438073 |
tctattttctaaatgtcatcatcattgtcctctttcttccgtatgattcctctct |
7438019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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