View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_24 (Length: 349)
Name: NF15431_low_24
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 10 - 333
Target Start/End: Complemental strand, 24239150 - 24238827
Alignment:
| Q |
10 |
ttaaaagaaggcgttgaagttgaattttacagcaatggtgatttctacgaaggagaatttcacggtggaaagtgtaatggaagtggagtttatcattatt |
109 |
Q |
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| T |
24239150 |
ttaaaagaaggtgttgaagttgaattttacagcaatggtgatttctacgaaggagaatttcacggtggaaagtgtaatggaagtggagtttatcattatt |
24239051 |
T |
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| Q |
110 |
atgtgagtggaagatatgaaggtgattgggttgatggaaaatatgatggttatggaattgaaagctgggctaggggaagtagatataagggttgttataa |
209 |
Q |
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| T |
24239050 |
atgtgagtggaagatatgaaggtgattgggttgatggaaaatatgatggttatggaattgaaagctgggctaggggaagtagatataagggttgttataa |
24238951 |
T |
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| Q |
210 |
acaaggtttgagacatggttatggtgtttatagattttatactagtgattgttattctggggaatggtttaatggacaaagtcatggttttggtgttcaa |
309 |
Q |
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| T |
24238950 |
acaaggtttgagacatggttatggtgtttatagattttatactggtgattgttattctggggaatggtttaatggacagagtcatggttttggtgttcaa |
24238851 |
T |
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| Q |
310 |
tcttgttctgatggaagttgttat |
333 |
Q |
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| T |
24238850 |
tcttgttctgatgggagttgttat |
24238827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 34 - 322
Target Start/End: Complemental strand, 32693860 - 32693572
Alignment:
| Q |
34 |
ttttacagcaatggtgatttctacgaaggagaatttcacggtggaaagtgtaatggaagtggagtttatcattattatgtgagtggaagatatgaaggtg |
133 |
Q |
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| T |
32693860 |
ttttacagcaacggtgatttttacgaaggggagtttcataaaggaagaagtaacggaagtggtgtgtataattactttgtgaatggaagatatgaaggtg |
32693761 |
T |
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| Q |
134 |
attgggttgatggaaaatatgatggttatggaattgaaagctgggctaggggaagtagatataagggttgttataaacaaggtttgagacatggttatgg |
233 |
Q |
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| T |
32693760 |
attgggttgatggaagatatgatggatatggaattgagagttgggctagagggagtagatataagggtcagtatagaaaaggaatgagacatggttatgg |
32693661 |
T |
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| Q |
234 |
tgtttatagattttatactagtgattgttattctggggaatggtttaatggacaaagtcatggttttggtgttcaatcttgttctgatg |
322 |
Q |
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| T |
32693660 |
tgtttataggttctatactggtgattctttttctggtgaatggtgtaatggtcaaagtcatggtatgggtcttcaaacttgttctgatg |
32693572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 91 - 308
Target Start/End: Complemental strand, 1587085 - 1586868
Alignment:
| Q |
91 |
agtggagtttatcattattatgtgagtggaagatatgaaggtgattgggttgatggaaaatatgatggttatggaattgaaagctgggctaggggaagta |
190 |
Q |
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||||| |||||| | ||| || ||||||||||||||||||| |||||||||| || |||||||| |||| ||| |||| || ||| || |||||||| |
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| T |
1587085 |
agtggggtttattactataatatgagtggaagatatgaagggaattgggttgacgggaaatatgaaggttttggtgttgagagttggagtaagggaagta |
1586986 |
T |
|
| Q |
191 |
gatataagggttgttataaacaaggtttgagacatggttatggtgtttatagattttatactagtgattgttattctggggaatggtttaatggacaaag |
290 |
Q |
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| T |
1586985 |
ggtataagggtatgtatagagatggattgagaaatgggtttggtgtttatagattttatactggagatgtttatgctggtgaatggttgaatggacagag |
1586886 |
T |
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| Q |
291 |
tcatggttttggtgttca |
308 |
Q |
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| T |
1586885 |
tcatggtagtggtgttca |
1586868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 191
Target Start/End: Complemental strand, 41090390 - 41090290
Alignment:
| Q |
91 |
agtggagtttatcattattatgtgagtggaagatatgaaggtgattgggttgatggaaaatatgatggttatggaattgaaagctgggctaggggaagta |
190 |
Q |
| |
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||||| |||||||||| | || |||||||||||| ||||||||||||| |||||||||| |||||||||| ||| |||||| |||||||| ||||||| |
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| T |
41090390 |
agtggtgtttatcattttcatatgagtggaagatttgaaggtgattggattgatggaaagtatgatggttttggtgttgaaacgtgggctagaggaagta |
41090291 |
T |
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| Q |
191 |
g |
191 |
Q |
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| T |
41090290 |
g |
41090290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 17303697 - 17303611
Alignment:
| Q |
210 |
acaaggtttgagacatggttatggtgtttatagattttatactagtgattgttattctggggaatggtttaatggacaaagtcatgg |
296 |
Q |
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| T |
17303697 |
acaaggattgagacatgggtttggtgtttataggttttatactggggatgtttatactggagaatggtctaatggacagagtcatgg |
17303611 |
T |
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