View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_26 (Length: 334)
Name: NF15431_low_26
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 6 - 303
Target Start/End: Complemental strand, 15903493 - 15903195
Alignment:
| Q |
6 |
cacagatgatgaagaggtaggaagaaagggg-atctccttgcctaatgcctgtttgagggtagaaaactccagtagggttaccattgagaagaatatcaa |
104 |
Q |
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| T |
15903493 |
cacaaatgatgaagaggtaggaagaaagggggatctccttgcctaatgcctctttgagggtagaaaactccagtagggttaccattgagaagaatatcaa |
15903394 |
T |
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| Q |
105 |
aggatactgactgaatacacttcatgattaaggcaatagtttttgtaggaaaactcatggcagttagagatttttcaataaagtcccactctaaactatc |
204 |
Q |
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| T |
15903393 |
aggatactgactgaatacacttcatgattaaggcaatagtttttgtaggaaaactcatggcagttatagatttttcaataaagtcccactataaactatt |
15903294 |
T |
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| Q |
205 |
ataagctttagcaatgtctaatttgatgccaacataacctttatgcttacttttagattgcttcaaataataaaaaatttcaaaagctataagagagtt |
303 |
Q |
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| T |
15903293 |
ataagctttagcaatgtctaatttgatgccaacataacctttatgcttacttttagattgcttcaaataatgaaaattttcaaaagctataagagagtt |
15903195 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 41093962 - 41094024
Alignment:
| Q |
181 |
aataaagtcccactctaaactatcataagctttagcaatgtctaatttgatgccaacataacc |
243 |
Q |
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| T |
41093962 |
aataaagttccattctagaatgtcataagctttagcaatgtctaattttatgcccacaaaacc |
41094024 |
T |
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