View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_27 (Length: 333)
Name: NF15431_low_27
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 7e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 30 - 192
Target Start/End: Original strand, 42227737 - 42227899
Alignment:
| Q |
30 |
atataaactcaatcagattcatcaaatcgaaaaggataaaaatccaacattgttgcttccgaactaagaagatgcggaaccaaacaagcacgtaaacttg |
129 |
Q |
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| T |
42227737 |
atataaactcaatcagattcatcaaatcgaaaaggataaaaaacctacgttgttgcttccgaactaagaagatgcggaaccaaacaagcacgtaaacttg |
42227836 |
T |
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| Q |
130 |
taagcttgttttagttctcgtaagttggattgtagcaagttctcttattctaagaaagagtcc |
192 |
Q |
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| T |
42227837 |
taagcttgttttagttctcgtaagttggattgtagcaagttctcttattctaagaaagagtcc |
42227899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 42227986 - 42228025
Alignment:
| Q |
279 |
cttcgtaaactgagtttgttaataaaaaatgtagggaaat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
42227986 |
cttcgtaaactgagtttgttaataaaaaatgtagggaaat |
42228025 |
T |
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