View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15431_low_29 (Length: 312)
Name: NF15431_low_29
Description: NF15431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15431_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 27 - 302
Target Start/End: Original strand, 21240613 - 21240888
Alignment:
| Q |
27 |
tcttcgtttctttactttcaaacactgaatttggttcacattgtacctcgaaagattgatgtctctttaatcagagttgacttttttgaaaaaatttcaa |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21240613 |
tcttcgtttctttactttcaaacactgaatttggttcacattgtacctcgaaagattgatgtctctttaatcaaagttgacttttttgaaaaaatttcaa |
21240712 |
T |
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| Q |
127 |
attgttggctatcatttttgtgactctcaattcatatatgattttgcaggcacaagatttcaggcaacatggaaccaagcttaggagaaagatgtggttc |
226 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240713 |
attgttggctatcatttttgtgactttcaattcatatatgattttgcaggcacaagatttcaggcaacatggaaccaagcttaggagaaagatgtggttc |
21240812 |
T |
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| Q |
227 |
caaaatatgaagataaagctaattgttctgggtatcataattgccctaattctcattattgttctttcaatctgtg |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21240813 |
caaaatatgaagataaagctaattgttctgggtatcataattgccctaattctcattattgttctttcaatctgtg |
21240888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 292
Target Start/End: Original strand, 21215978 - 21216061
Alignment:
| Q |
209 |
aggagaaagatgtggttccaaaatatgaagataaagctaattgttctgggtatcataattgccctaattctcattattgttctt |
292 |
Q |
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| T |
21215978 |
aggagaaagatgtggtttcagaacatgaagataaaactaatagttcttgctatcataattgtcattattctcataattgttctt |
21216061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 7525209 - 7525084
Alignment:
| Q |
169 |
tttgcaggcacaagatttcaggcaacatggaaccaagcttaggagaaagatgtggttccaaaatatgaagataaagctaattgttctgggtatcataatt |
268 |
Q |
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|||||||||||||||||||||||| || |||||| || | || ||||||||||||| ||||| |||||||||||||| || ||||| | |||||||||| |
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| T |
7525209 |
tttgcaggcacaagatttcaggcagcagggaacccagttgagaagaaagatgtggtatcaaaacatgaagataaagctcatagttcttgctatcataatt |
7525110 |
T |
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| Q |
269 |
gccctaattctcattattgttctttc |
294 |
Q |
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|| | |||||||||||||||||||| |
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| T |
7525109 |
gcattgattctcattattgttctttc |
7525084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 294
Target Start/End: Complemental strand, 7533077 - 7532952
Alignment:
| Q |
169 |
tttgcaggcacaagatttcaggcaacatggaaccaagcttaggagaaagatgtggttccaaaatatgaagataaagctaattgttctgggtatcataatt |
268 |
Q |
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|||||||||||||||||||||||| || |||||| || | || ||||||||||||| ||||| |||||||||||||| || ||||| | |||||||||| |
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| T |
7533077 |
tttgcaggcacaagatttcaggcagcagggaacccagttgagaagaaagatgtggtatcaaaacatgaagataaagctcatagttcttgctatcataatt |
7532978 |
T |
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| Q |
269 |
gccctaattctcattattgttctttc |
294 |
Q |
| |
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|| | |||||||||||||||||||| |
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| T |
7532977 |
gcattgattctcattattgttctttc |
7532952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 171 - 294
Target Start/End: Complemental strand, 7498994 - 7498871
Alignment:
| Q |
171 |
tgcaggcacaagatttcaggcaacatggaaccaagcttaggagaaagatgtggttccaaaatatgaagataaagctaattgttctgggtatcataattgc |
270 |
Q |
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|||||||||||||||||||||| || |||||| | | |||||||||||||||| ||||| |||||||| ||||| || ||||| | |||||||||||| |
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| T |
7498994 |
tgcaggcacaagatttcaggcagcagggaacccaattgaggagaaagatgtggtatcaaaacatgaagatcaagctcatagttcttgctatcataattgc |
7498895 |
T |
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| Q |
271 |
cctaattctcattattgttctttc |
294 |
Q |
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| ||| |||||||||||||||| |
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| T |
7498894 |
attgattttcattattgttctttc |
7498871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 7486624 - 7486557
Alignment:
| Q |
227 |
caaaatatgaagataaagctaattgttctgggtatcataattgccctaattctcattattgttctttc |
294 |
Q |
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||||| |||||||| ||||| || ||||| | |||||||||||| | |||||||||||||||||||| |
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| T |
7486624 |
caaaacatgaagatcaagctcatagttcttgctatcataattgcattgattctcattattgttctttc |
7486557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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